Mm00514283_s1 Best Coverage

• Gene Symbol: Cebpa
• Gene Name: CCAAT/enhancer binding protein (C/EBP), alpha
• Gene Aliases: C/ebpalpha, CBF-A, Cebp
• Chromosome Location: Chr.7: 35119293 - 35121928 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cebpa
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001287514.1	NP_001274443.1	1	672		99
	NM_001287515.1	NP_001274444.1	1	672		99
	NM_001287521.1	NP_001274450.1	1	672		99
	NM_001287523.1	NP_001274452.1	1	672		99
	NM_007678.3	NP_031704.2	1	672		99
GenBank mRNA	AK155281.1	-	1	632		99
	BC011118.1	-	1	662	4194023	99
	BC028890.1	-	1	662	4160963	99
	BC051102.1	-	1	662	5051761	99
	BC058161.1	-	1	662	5053056	99

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700000652.mm.1

Additional Information:

This assay is in the 5'UTR region of the NM_001287523.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Mus musculus, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cebpa

Panther Classification:

Molecular Function -

basic leucine zipper transcription factor

Gene Ontology Categories:

Process(es)

urea cycle
negative regulation of transcription from RNA polymerase II promoter
liver development
embryonic placenta development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase I promoter
transcription from RNA polymerase II promoter
mitochondrion organization
Notch signaling pathway
multicellular organism development
cholesterol metabolic process
negative regulation of cell proliferation
cytokine-mediated signaling pathway
myeloid cell differentiation
macrophage differentiation
lung development
granulocyte differentiation
regulation of cell proliferation
glucose homeostasis
fat cell differentiation
positive regulation of fat cell differentiation
positive regulation of osteoblast differentiation
negative regulation of cell cycle
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of transcription from RNA polymerase III promoter
cell maturation
inner ear development
white fat cell differentiation
brown fat cell differentiation
lipid homeostasis
cellular response to lithium ion
cellular response to organic cyclic compound

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase I regulatory region DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription coactivator activity
protein binding
transcription factor binding
kinase binding
protein domain specific binding
protein complex binding
protein homodimerization activity
histone deacetylase binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
HMG box domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	TC0700000652.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	NM_001287514.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	NM_001287515.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	NM_001287521.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	NM_001287523.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	NM_007678.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700005467.mm.1	NM_007678.3	Refseq