Mm00554814_g1

• Gene Symbol: Chfr
• Gene Name: checkpoint with forkhead and ring finger domains
• Gene Aliases: 5730484M20Rik, C230082M18, RNF116
• Chromosome Location: Chr.5: 110135759 - 110171973 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Chfr
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001289577.1	NP_001276506.1	1 - 2	101		73
	NM_001289578.1	NP_001276507.1	1 - 2	101		73
	NM_001289579.1	NP_001276508.1	1 - 2	101		73
	NM_001289580.1	NP_001276509.1	1 - 2	101		73
	NM_172717.4	NP_766305.2	1 - 2	101		73
GenBank mRNA	AK039281.1	-	1 - 2	90		73
	AK048930.1	-	1 - 2	81		73
	AK052473.1	-	1 - 2	56		73
	AK077629.1	-	1 - 2	73		73
	AK133154.1	-	1 - 2	83		73
	AK147892.1	-	1 - 2	76		73
	AK148436.1	-	1 - 2	72		73
	AK154038.1	-	1 - 2	83		73
	AK155295.1	-	1 - 2	73		73
	AK155525.1	-	1 - 2	73		73
	AK169182.1	-	1 - 2	54		73
	AK169193.1	-	1 - 2	56		73
	BC049792.1	-	1 - 2	55	6510480	73
	BY142662.1	-	1 - 2	91		73

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0500001132.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK052473.1,AK077629.1,AK133154.1,AK147892.1,AK154038.1,AK155295.1,AK155525.1,AK169182.1,AK169193.1,BC049792.1,NM_001289577.1,NM_001289578.1,NM_001289579.1,NM_001289580.1,NM_172717.4 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Chfr

Panther Classification:

Molecular Function -

ubiquitin-protein ligase, protein modifying enzyme

Gene Ontology Categories:

Process(es)

protein polyubiquitination
mitotic cell cycle
ubiquitin-dependent protein catabolic process
cell cycle
mitotic nuclear division
mitotic cell cycle checkpoint
protein ubiquitination
modification-dependent protein catabolic process
positive regulation of protein ubiquitination
protein destabilization
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
cell division

Function(s)

nucleotide binding
ubiquitin-protein transferase activity
protein binding
zinc ion binding
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
ligase activity
ribosomal S6-glutamic acid ligase activity
coenzyme F420-0 gamma-glutamyl ligase activity
coenzyme F420-2 alpha-glutamyl ligase activity
metal ion binding
ubiquitin protein ligase activity
protein-glycine ligase activity
protein-glycine ligase activity, initiating
protein-glycine ligase activity, elongating
tubulin-glycine ligase activity
protein-glutamic acid ligase activity
tubulin-glutamic acid ligase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0500009644.mm.1	TC0500001132.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500009644.mm.1	NM_001289577.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009644.mm.1	NM_001289578.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009644.mm.1	NM_001289579.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009644.mm.1	NM_001289580.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009644.mm.1	NM_172717.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009646.mm.1	TC0500001132.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500009646.mm.1	NM_001289577.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009646.mm.1	NM_001289578.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009646.mm.1	NM_001289579.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009646.mm.1	NM_001289580.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009646.mm.1	NM_172717.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009645.mm.1	TC0500001132.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500009645.mm.1	NM_001289577.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009645.mm.1	NM_001289578.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009645.mm.1	NM_001289579.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009645.mm.1	NM_001289580.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500009645.mm.1	NM_172717.4	Refseq