Mm00599848_m1 Best Coverage

• Gene Symbol: Nr6a1
• Gene Name: nuclear receptor subfamily 6, group A, member 1
• Gene Aliases: 1700113M01Rik, Gcnf, NCNF, RTR
• Chromosome Location: Chr.2: 38723369 - 38927688 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nr6a1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001159548.1	NP_001153020.1	8 - 9	1331		98
	NM_001159549.1	NP_001153021.1	8 - 9	1328		98
	NM_010264.4	NP_034394.1	10 - 11	1639		98
GenBank mRNA	AF390896.1	-	11 - 12	1784		98
	CN532747.1	-	1 - 2	152		98
	U09563.1	-	10 - 11	1639		98
	U14666.1	-	10 - 11	1598		98

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200003424.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Recommended Assay, Mus musculus, Mouse Estrogen Panel, Mouse Stem Cell Pluripotency, Inventoried, Mouse_Stem_Cell, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Nr6a1

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription by RNA polymerase II
multicellular organism development
spermatogenesis
cell differentiation
steroid hormone mediated signaling pathway
positive regulation of transcription by RNA polymerase II

Function(s)

RNA polymerase II cis-regulatory region sequence-specific DNA binding
DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
protein binding
zinc ion binding
protein homodimerization activity
sequence-specific DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	TC0200003424.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	NM_001159548.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	NM_001159548.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	NM_001159549.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	NM_001159549.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	NM_010264.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029360.mm.1	NM_010264.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	TC0200003424.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	NM_001159548.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	NM_001159548.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	NM_001159549.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	NM_001159549.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	NM_010264.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029362.mm.1	NM_010264.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	TC0200003424.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	NM_001159548.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	NM_001159548.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	NM_001159549.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	NM_001159549.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	NM_010264.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200029361.mm.1	NM_010264.4	Refseq