Mm00614092_g1

• Gene Symbol: Six3os1
• Gene Name: SIX homeobox 3, opposite strand 1
• Gene Aliases: D17Mgi26, E130112H22Rik, Rncr1, Six3os
• Chromosome Location: Chr.17: 85601932 - 85618396 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Six3os1
Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_015387.2			1 - 2	342		69
GenBank mRNA	AK044330.1	-	LIT3371 RNCR1	1 - 2	312		69
	AY589791.1	-		1 - 2	311		69

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BB642261.1	-	1 - 2	312		Chr. 17 - 85617270 - 85618365 [-] on Build GRCm38	69
GenBankmRNA	BE335872.1	-	1 - 2	222		Chr. 17 - 85617367 - 85618276 [-] on Build GRCm38	69
GenBankmRNA	BE954756.1	-	1 - 2	221		Chr. 17 - 85617552 - 85618275 [-] on Build GRCm38	69

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	calmodulin-lysine N-methyltransferase	Camkmt	1700106N22Rik, AI480743, AV099781, CLNMT, CaM KMT	-158.7kb	Anti-sense	Chr. 17 - 85090592 - 85458589 on NCBI Build GRCm38
Downstream	sine oculis-related homeobox 3	Six3	E130112M24Rik, Six3a, Six3alpha, Six3b, Six3beta	2.5kb	Anti-sense	Chr. 17 - 85620834 - 85626191 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1700002661.mm.1

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Mus musculus, Probe spans exons

Gene Ontology Categories:

Process(es)

regulation of photoreceptor cell differentiation

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_015385.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_015385.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_015386.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_015386.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_015387.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_015387.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038082.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038083.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038083.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038084.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038084.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038085.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038085.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038086.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	NR_038086.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024218.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024215.mm.1	NR_015387.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024215.mm.1	NR_015387.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024215.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_015385.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_015385.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_015386.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_015386.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_015387.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_015387.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038082.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038083.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038083.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038084.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038084.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038085.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038085.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038086.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	NR_038086.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024220.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_015385.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_015385.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_015386.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_015386.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_015387.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_015387.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038082.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038083.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038083.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038084.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038084.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038085.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038085.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038086.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	NR_038086.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024221.mm.1	TC1700002661.mm.1	MTA TC