Mm00723484_m1 Best Coverage

• Gene Symbol: Atp2c1
• Gene Name: ATPase, Ca++-sequestering
• Gene Aliases: 1700121J11Rik, ATP2C1A, AW061228, BCPM, D930003G21Rik, HHD, SPCA, pmr1
• Chromosome Location: Chr.9: 105411362 - 105521257 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Atp2c1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001253831.1	NP_001240760.1	5 - 6	574		117
	NM_001253834.1	NP_001240763.1	6 - 7	665		117
	NM_001253836.1	NP_001240765.1	5 - 6	597		117
	NM_175025.4	NP_778190.3	6 - 7	780		117
GenBank mRNA	AJ551270.1	-	4 - 5	362		117
	AK007226.1	-	7 - 8	566		117
	AK028393.1	-	5 - 6	543		117
	AK133703.1	-	5 - 6	575		117
	AK136062.1	-		665		117
	AK159918.1	-	6 - 7	731		117
	AK163049.1	-	6 - 7	626		117
	BC043091.1	-	6 - 7	746	6405251	117
	BC043706.1	-	6 - 7	727		117

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0900002991.mm.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Ion Channel, Transporter, Mammalian Gene Collection, Recommended Assay, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Atp2c1

Panther Classification:

Molecular Function -

primary active transporter

Gene Ontology Categories:

Process(es)

transport
ion transport
calcium ion transport
manganese ion transport
cellular calcium ion homeostasis
signal transduction
epidermis development
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
cellular manganese ion homeostasis
actin cytoskeleton reorganization
Golgi calcium ion homeostasis
Golgi calcium ion transport
positive regulation of I-kappaB kinase/NF-kappaB signaling
calcium ion transmembrane transport
manganese ion transmembrane transport

Function(s)

nucleotide binding
signal transducer activity
calcium-transporting ATPase activity
calcium ion binding
ATP binding
manganese-transporting ATPase activity
hydrolase activity
manganese ion binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_001253831.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_001253831.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_001253834.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_001253834.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_001253836.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_001253836.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_175025.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	NM_175025.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024710.mm.1	TC0900002991.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_001253831.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_001253831.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_001253834.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_001253834.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_001253836.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_001253836.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_175025.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	NM_175025.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0900024711.mm.1	TC0900002991.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	388850	-	-