Mm01149627_m1

• Gene Symbol: Smarcb1
• Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
• Gene Aliases: AU020204, Baf47, Ini1, SNF5/INI1, Snf5
• Chromosome Location: Chr.10: 75896769 - 75921614 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smarcb1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001161853.1	NP_001155325.1	1 - 2	313		88
	NM_011418.2	NP_035548.1	1 - 2	313		88
GenBank mRNA	AB017343.1	-	1 - 2	94		88
	AB017344.1	-	1 - 2	94		88
	AB041578.1	-	1 - 2	268		88
	AJ011739.1	-	1 - 2	287		88
	AJ011740.1	-	1 - 2	287		88
	AK075906.1	-	1 - 2	296		88
	AK145552.1	-	1 - 2	302		88
	AK150169.1	-	1 - 2	314		88
	AK185069.1	-		156		88
	BC025163.1	-	1 - 2	267	3154501	88

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1000002391.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Mus musculus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smarcb1

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Process(es)

blastocyst development
blastocyst hatching
DNA repair
nucleosome disassembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
cell cycle
nervous system development
negative regulation of cell proliferation
chromatin modification
cell differentiation
single stranded viral RNA replication via double stranded DNA intermediate
ATP-dependent chromatin remodeling
positive regulation by host of viral transcription
mitotic cell cycle phase transition
positive regulation of transcription from RNA polymerase II promoter
positive regulation of sequence-specific DNA binding transcription factor activity

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
p53 binding
transcription coactivator activity
protein binding
Tat protein binding
nucleosomal DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1000017120.mm.1	NM_001161853.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017120.mm.1	NM_001161853.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017120.mm.1	NM_011418.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017120.mm.1	NM_011418.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017120.mm.1	TC1000002391.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000017119.mm.1	NM_001161853.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017119.mm.1	NM_001161853.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017119.mm.1	NM_011418.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017119.mm.1	NM_011418.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017119.mm.1	TC1000002391.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000017122.mm.1	NM_001161853.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017122.mm.1	NM_001161853.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017122.mm.1	NM_011418.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017122.mm.1	NM_011418.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017122.mm.1	TC1000002391.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	889629	-	-