Mm01158259_m1 Best Coverage

• Gene Symbol: Ctnna1
• Gene Name: catenin (cadherin associated protein), alpha 1
• Gene Aliases: 2010010M04Rik, AA517462, AI988031, Catna1
• Chromosome Location: Chr.18: 35118912 - 35254775 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ctnna1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_009818.1	NP_033948.1	3 - 4	370		61
GenBank mRNA	AK004623.1	-	3 - 4	328		61
	AK036752.1	-	3 - 4	395		61
	AK148496.1	-	3 - 4	367		61
	AK149721.1	-	3 - 4	387		61
	AK149738.1	-	3 - 4	387		61
	AK159339.1	-	3 - 4	385		61
	AK168635.1	-	3 - 4	395		61
	BC048163.1	-	3 - 4	358	6418358	61
	BC060174.1	-	3 - 4	366		61
	BC068316.1	-	3 - 4	362	30106659	61
	BC105576.1	-	3 - 4	350	3967124	61
	D90362.1	-	3 - 4	361		61
	X59990.1	-	3 - 4	370		61

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1800000306.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ctnna1

Panther Classification:

Molecular Function -

non-motor actin binding protein

Gene Ontology Categories:

Process(es)

actin filament organization
cell adhesion
establishment or maintenance of cell polarity
negative regulation of neuroblast proliferation
gap junction assembly
cellular protein localization
regulation of cell proliferation
negative regulation of apoptotic process
apical junction assembly
positive regulation of smoothened signaling pathway
protein heterooligomerization
cellular response to indole-3-methanol
epithelial cell-cell adhesion
negative regulation of cell motility
negative regulation of integrin-mediated signaling pathway
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
positive regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

structural molecule activity
protein binding
beta-catenin binding
vinculin binding
poly(A) RNA binding
gamma-catenin binding
cadherin binding
actin filament binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1800002237.mm.1	NM_009818.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002237.mm.1	NM_009818.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002237.mm.1	TC1800000306.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1800002235.mm.1	NM_009818.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002235.mm.1	NM_009818.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002235.mm.1	TC1800000306.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1800002236.mm.1	NM_009818.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002236.mm.1	NM_009818.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002236.mm.1	TC1800000306.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1800002238.mm.1	NM_009818.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002238.mm.1	NM_009818.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1800002238.mm.1	TC1800000306.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	558799	-	-