Name: [Mm01180776_g1] [Snhg3]
Creator: Thermo Fisher Scientific
Keywords: [Snhg3] Assay, [small nucleolar RNA host gene 3] Assay

Assay Details

Gene Symbol: Snhg3
Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003270.2			2 - 3	119		117
GenBank mRNA	AJ006837.1	-	LIT1313 U17HG	2 - 3	66		117
	AK076188.1	-		2 - 3	67		117
	BC100513.1	-		2 - 3	112		117
	CN834544.1	-		2 - 3	122		117

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	EL959114.1	-	2 - 3	111	Chr. 4 - 132351934 - 132353651 [-] on Build GRCm38	117
GenBankmRNA	BY118837.1	-	2 - 3	103	Chr. 4 - 132352035 - 132353668 [-] on Build GRCm38	117
GenBankmRNA	CN841655.1	-	2 - 3	115	Chr. 4 - 132351934 - 132353679 [-] on Build GRCm38	117
GenBankmRNA	DV069876.1	-		135	Chr. - - [-] on Build	117
GenBankmRNA	DV069651.1	-		86	Chr. - - [-] on Build	117
GenBankmRNA	DV061498.1	-		164	Chr. - - [-] on Build	117
GenBankmRNA	CA460116.1	-		156	Chr. - - [-] on Build	117
GenBankmRNA	DV062701.1	-		187	Chr. - - [-] on Build	117
GenBankmRNA	AI787530.1	-	2 - 3	65	Chr. 4 - 132351934 - 132353632 [-] on Build GRCm38	117
GenBankmRNA	CJ216122.1	-	1 - 2	81	Chr. 4 - 132351934 - 132352750 [-] on Build GRCm38	117
GenBankmRNA	CA456802.1	-		133	Chr. - - [-] on Build	117
GenBankmRNA	BY144490.1	-	2 - 3	63	Chr. 4 - 132351966 - 132353630 [-] on Build GRCm38	117
GenBankmRNA	BY121084.1	-	2 - 3	102	Chr. 4 - 132352035 - 132353668 [-] on Build GRCm38	117
GenBankmRNA	BX639589.1	-	1 - 2		Chr. 4 - 132351934 - 132353658 [+] on Build GRCm38	117
GenBankmRNA	BB605517.1	-	2 - 3	69	Chr. 4 - 132352034 - 132353634 [-] on Build GRCm38	117
GenBankmRNA	DV072144.1	-		86	Chr. - - [-] on Build	117
GenBankmRNA	BE198161.1	-	2 - 3	93	Chr. 4 - 132352117 - 132353660 [-] on Build GRCm38	117
GenBankmRNA	CA492396.1	-		103	Chr. - - [-] on Build	117
GenBankmRNA	BY713659.1	-	2 - 3	61	Chr. 4 - 132351933 - 132353628 [-] on Build GRCm38	117
GenBankmRNA	AI788223.1	-	2 - 3	65	Chr. 4 - 132351934 - 132353632 [-] on Build GRCm38	117
GenBankmRNA	BY792896.1	-	2 - 3	97	Chr. 4 - 132348014 - 132353663 [-] on Build GRCm38	117
GenBankmRNA	BY579581.1	-	1 - 2	107	Chr. 4 - 132351934 - 132352776 [-] on Build GRCm38	117
GenBankmRNA	DV041333.1	-		161	Chr. - - [-] on Build	117
GenBankmRNA	EL964328.1	-	1 - 2		Chr. 4 - 132351934 - 132353658 [+] on Build GRCm38	117
GenBankmRNA	CA786577.1	-		115	Chr. - - [-] on Build	117

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA, H/ACA box 73b	Snora73b	U17B		Sense	Chr. 4 - 132352322 - 132352526 on NCBI Build GRCm38
Downstream	small nucleolar RNA, H/ACA box 73a	Snora73a	E1, E1-7, E1b, U17A	77.0	Sense	Chr. 4 - 132352775 - 132352979 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0400004223.mm.1

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Mus musculus

1700

Probe spans exons

MicroArray Probes:

Agilent Affymetrix ABI

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	NR_003270.2	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	AJ006837.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	AK076188.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	BC100513.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	CN834544.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	NR_003270.2	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	AJ006837.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	AK076188.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	BC100513.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P661071	CN834544.1	mouse_transcriptome
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	163897	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	748185	-	-
Agilent SurePrint G3 Mouse CGH Microarray 4x180K	140421	-	-
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	NR_003270.2	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	AJ006837.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	AK076188.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	BC100513.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	CN834544.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	NR_003270.2	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	AJ006837.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	AK076188.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	BC100513.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_52_P661071	CN834544.1	mouse_transcriptome

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT MG-430 PM Array Plate	1433789_PM_at	-	-
Mouse Genome 430 2.0 Array	1433789_PM_at	-	-
Mouse Genome 430 2.0 Array	1433789_at	-	-
Affymetrix Mouse Clariom S Array	PSR0400030077.mm.1	TC0400004223.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400030077.mm.1	NR_003270.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400030077.mm.1	NR_003270.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0400030076.mm.1	TC0400004223.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400030076.mm.1	NR_003270.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400030076.mm.1	NR_003270.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0400030075.mm.1	TC0400004223.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400030075.mm.1	NR_003270.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400030075.mm.1	NR_003270.2	Refseq
Mouse Expression Set 430	1433789_at	-	-
Mouse Expression Set 430	1433789_PM_at	-	-
Affymetrix HT Mouse Genome 430B Array	1433789_at	-	-
Affymetrix HT Mouse Genome 430B Array	1433789_PM_at	-	-

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System Message

Genomic Map