Mm01232888_g1

• Gene Symbol: Xist
• Gene Name: inactive X specific transcripts
• Gene Aliases: A430022B11, AI314753
• Chromosome Location: Chr.X: 103460373 - 103483233 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Xist
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_001463.3		5 - 6	10101		81
	NR_001570.2		5 - 6	10101		81
GenBank mRNA	L04961.1	-	5 - 6	10065		81

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CA880243.1	-	1 - 2	55		Chr. X - 103467794 - 103469352 [-] on Build GRCm38	81

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	testis specific X-linked gene	Tsx	AV207184	-44.2kb	Anti-sense	Chr. X - 103409101 - 103424588 on NCBI Build GRCm38
Downstream	Jpx transcript, Xist activator (non-protein coding)	Jpx	2010000I03Rik, 2510040I06Rik, Enox	24.1kb	Anti-sense	Chr. X - 103493576 - 103506425 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0X00002775.mm.1

• Set Membership: Amplicon length between 71 and 85, Detect Genomic DNA, Mus musculus, Probe spans exons

Gene Ontology Categories:

Process(es)

dosage compensation by inactivation of X chromosome
spongiotrophoblast differentiation

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0X00017510.mm.1	NR_001463.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00017510.mm.1	NR_001463.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00017510.mm.1	NR_001570.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00017510.mm.1	NR_001570.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00017510.mm.1	TC0X00002775.mm.1	MTA TC