Mm01240661_m1 Best Coverage

• Gene Symbol: Rfx4
• Gene Name: regulatory factor X, 4 (influences HLA class II expression)
• Gene Aliases: 4933412G19Rik, NYD-sp10
• Chromosome Location: Chr.10: 84756048 - 84906538 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rfx4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001024918.1	NP_001020089.1	13 - 14	1777		67
	NM_027689.3	NP_081965.2	9 - 10	1109		67
GenBank mRNA	AB086957.1	-	13 - 14	1631		67
	AB089184.1	-	9 - 10	1110		67
	AK132673.1	-	10 - 11	1172		67
	AY102010.2	-	13 - 14	1660		67
	AY342003.1	-	13 - 14	1642		67
	BC138719.1	-	9 - 10	1097	8861741	67
	BC138720.1	-	9 - 10	1097	8861742	67

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1000001024.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Rfx4

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
dorsal spinal cord development
telencephalon development
cerebellar cortex morphogenesis
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
forebrain development
midbrain development
cilium assembly
positive regulation of transcription from RNA polymerase II promoter
regulation of protein processing

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1000007735.mm.1	NM_001024918.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007735.mm.1	NM_001024918.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007735.mm.1	NM_027689.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007735.mm.1	NM_027689.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007735.mm.1	TC1000001024.mm.1	MTA TC