Mm01246405_g1

• Gene Symbol: Jmjd6
• Gene Name: jumonji domain containing 6
• Gene Aliases: 5730436I23Rik, D11Ertd195e, PSR, PtdSerR, Ptdsr, mKIAA0585
• Chromosome Location: Chr.11: 116837432 - 116843449 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Jmjd6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_033398.2	NP_203971.2	1 - 2	387		71
GenBank mRNA	AK122317.1	-	1 - 2	228		71
	CX210791.1	-	1 - 2	93		71
	EF527404.1	-	1 - 2	387		71
	EF527405.1	-	1 - 2	173		71

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1100004127.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Detect Genomic DNA, Mus musculus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Jmjd6

Panther Classification:

Molecular Function -

protein modifying enzyme

Gene Ontology Categories:

Process(es)

blood vessel development
kidney development
sprouting angiogenesis
transcription, DNA-templated
regulation of transcription, DNA-templated
mRNA processing
cell surface receptor signaling pathway
multicellular organism development
heart development
RNA splicing
chromatin modification
peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
cell differentiation
lung development
T cell differentiation in thymus
macrophage activation
apoptotic cell clearance
recognition of apoptotic cell
regulation of mRNA splicing, via spliceosome
erythrocyte development
oxidation-reduction process
retina development in camera-type eye
histone H3-R2 demethylation
histone H4-R3 demethylation

Function(s)

sulfonate dioxygenase activity
RNA binding
single-stranded RNA binding
receptor activity
iron ion binding
protein binding
oxidoreductase activity
2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity
procollagen-proline dioxygenase activity
histone demethylase activity (H3-R2 specific)
histone demethylase activity (H4-R3 specific)
hypophosphite dioxygenase activity
identical protein binding
DNA-N1-methyladenine dioxygenase activity
metal ion binding
dioxygenase activity
C-19 gibberellin 2-beta-dioxygenase activity
C-20 gibberellin 2-beta-dioxygenase activity
peptidyl-lysine 5-dioxygenase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1100039169.mm.1	NM_033398.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039169.mm.1	NM_033398.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039169.mm.1	TC1100004127.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100039172.mm.1	NM_033398.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039172.mm.1	NM_033398.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039172.mm.1	TC1100004127.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100039171.mm.1	NM_033398.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039171.mm.1	NM_033398.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039171.mm.1	TC1100004127.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100039167.mm.1	NM_033398.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039167.mm.1	NM_033398.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100039167.mm.1	TC1100004127.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	907161	-	-