Mm01253371_m1

• Gene Symbol: Rpa1
• Gene Name: replication protein A1
• Gene Aliases: 5031405K23Rik, 70kDa, AA589576, AW557552, RF-A, RP-A, Rpa
• Chromosome Location: Chr.11: 75300259 - 75348383 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rpa1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001164223.1	NP_001157695.1	1 - 2	158		103
	NM_026653.2	NP_080929.1	1 - 2	158		103
GenBank mRNA	AK035084.1	-	1 - 2	86		103
	AK148035.1	-	1 - 2	99		103
	AK151590.1	-	1 - 2	111		103
	AK152296.1	-	1 - 2	88		103
	AK153107.1	-	1 - 2	88		103
	AK153144.1	-	1 - 2	111		103
	AK165316.1	-	1 - 2	71		103
	AK165944.1	-	1 - 2	89		103
	AK168400.1	-	1 - 2	107		103
	AK169599.1	-	1 - 2	88		103
	BC019119.1	-	1 - 2	89	4487586	103
	CJ078143.1	-	1 - 2	158		103
	CJ086677.1	-	1 - 2	158		103

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1100003221.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK148035.1, AK151590.1, AK152296.1, AK153144.1, AK165316.1, AK165944.1, AK169599.1, BC019119.1, NM_001164223.1, NM_026653.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Mus musculus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Rpa1

Gene Ontology Categories:

Process(es)

cell cycle checkpoint signaling
telomere maintenance
double-strand break repair via homologous recombination
in utero embryonic development
DNA replication
DNA repair
base-excision repair
nucleotide-excision repair
mismatch repair
DNA recombination
cellular response to DNA damage stimulus
positive regulation of cell population proliferation
hemopoiesis
homeostasis of number of cells within a tissue
chromosome organization
meiotic cell cycle

Function(s)

nucleic acid binding
DNA binding
chromatin binding
damaged DNA binding
single-stranded DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1100029640.mm.1	TC1100003221.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100029640.mm.1	NM_001164223.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029640.mm.1	NM_001164223.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029640.mm.1	NM_026653.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029640.mm.1	NM_026653.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029647.mm.1	TC1100003221.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100029647.mm.1	NM_001164223.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029647.mm.1	NM_001164223.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029647.mm.1	NM_026653.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029647.mm.1	NM_026653.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029642.mm.1	TC1100003221.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100029642.mm.1	NM_001164223.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029642.mm.1	NM_001164223.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029642.mm.1	NM_026653.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100029642.mm.1	NM_026653.2	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	924639	-	-