Mm01253707_m1 Best Coverage

• Gene Symbol: Trub1
• Gene Name: TruB pseudouridine (psi) synthase homolog 1 (E. coli)
• Gene Aliases: 2610009I02Rik, 9030425C13Rik, AI448235, BB118943, C76870
• Chromosome Location: Chr.19: 57452891 - 57491005 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Trub1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_028115.3	NP_082391.1	1 - 2	288		72
	NM_029839.3	NP_084115.2	1 - 2	288		72
GenBank mRNA	AK011362.1	-	1 - 2	283		72
	AK018525.1	-	1 - 2	261		72
	AK031674.1	-	1 - 2	266		72
	AK164095.1	-	1 - 2	259		72
	AK169221.1	-	1 - 2	254		72
	BC039287.1	-	1 - 2	233		72

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1900000814.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Trub1

Panther Classification:

Molecular Function -

isomerase

Gene Ontology Categories:

Process(es)

pseudouridine synthesis
RNA processing
tRNA modification
tRNA processing
RNA modification
mRNA pseudouridine synthesis

Function(s)

RNA binding
pseudouridine synthase activity
isomerase activity
pivalyl-CoA mutase activity
o-hydroxylaminobenzoate mutase activity
lupeol synthase activity
beta-amyrin synthase activity
baruol synthase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1900007161.mm.1	NM_028115.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007161.mm.1	NM_028115.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007161.mm.1	NM_029839.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007161.mm.1	NM_029839.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007161.mm.1	TC1900000814.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1900007160.mm.1	NM_028115.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007160.mm.1	NM_028115.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007160.mm.1	NM_029839.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007160.mm.1	NM_029839.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007160.mm.1	TC1900000814.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1900007162.mm.1	NM_028115.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007162.mm.1	NM_028115.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007162.mm.1	NM_029839.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007162.mm.1	NM_029839.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1900007162.mm.1	TC1900000814.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	785275	-	-