Mm01291223_g1

• Gene Symbol: Sox2ot
• Gene Name: SOX2 overlapping transcript (non-protein coding)
• Gene Aliases: B230215L15Rik
• Chromosome Location: Chr.3: 34560381 - 34677993 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox2ot
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_015580.2		1 - 2	188		98
GenBank mRNA	BC057611.1	-	1 - 2	188		98

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BU702442.1	-	1 - 2	187		Chr. 3 - 34560381 - 34675792 [+] on Build GRCm38	98
GenBankmRNA	BB646986.1	-	1 - 2	181		Chr. 3 - 34560388 - 34573862 [+] on Build GRCm38	98

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	DnaJ (Hsp40) homolog, subfamily C, member 19	Dnajc19	1810055D05Rik, AA959924, Tim14	-479.0kb	Anti-sense	Chr. 3 - 34057280 - 34081354 on NCBI Build GRCm38
Downstream	microRNA 1897	Mir1897	Mirn1897, mmu-mir-1897	77.7kb	Sense	Chr. 3 - 34638464 - 34638542 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0300000238.mm.1

• Set Membership: Amplicon length between 86 and 100, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Probe spans exons

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function