Mm01309607_m1

• Gene Symbol: Vdr
• Gene Name: vitamin D receptor
• Gene Aliases: Nr1i1
• Chromosome Location: Chr.15: 97854427 - 97908296 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vdr
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_009504.4	NP_033530.2	2 - 3	132		92
GenBank mRNA	AK030339.1	-	2 - 3	133		92
	AK154647.1	-	2 - 3	107		92
	AK156789.1	-	2 - 3	148		92
	BC006716.1	-	2 - 3	98	3710866	92
	D31969.1	-	2 - 3	100		92

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1500002159.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK030339.1, AK154647.1, AK156789.1, BC006716.1, D31969.1, NM_009504.4 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vdr

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
cell morphogenesis
skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
calcium ion transport
cellular calcium ion homeostasis
multicellular organism development
lactation
negative regulation of cell population proliferation
animal organ morphogenesis
positive regulation of gene expression
negative regulation of keratinocyte proliferation
positive regulation of vitamin D 24-hydroxylase activity
intracellular receptor signaling pathway
bile acid signaling pathway
steroid hormone mediated signaling pathway
positive regulation of keratinocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
intestinal absorption
regulation of calcium ion transport
positive regulation of apoptotic process involved in mammary gland involution
regulation of calcidiol 1-monooxygenase activity
mammary gland branching involved in pregnancy
vitamin D receptor signaling pathway
apoptotic signaling pathway

Function(s)

DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
nuclear receptor activity
vitamin D binding
protein binding
zinc ion binding
lithocholic acid receptor activity
sequence-specific DNA binding
metal ion binding
retinoid X receptor binding
vitamin D response element binding
calcitriol binding
lithocholic acid binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1500017441.mm.1	TC1500002159.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1500017441.mm.1	NM_009504.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017441.mm.1	NM_009504.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017443.mm.1	TC1500002159.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1500017443.mm.1	NM_009504.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017443.mm.1	NM_009504.4	Refseq