Mm01333021_m1

• Gene Symbol: Hoxa11os
• Gene Name: homeobox A11, opposite strand
• Gene Aliases: Hoxa11as, Hoxa11s
• Chromosome Location: Chr.6: 52245243 - 52249769 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hoxa11os
Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_015348.1			4 - 5	1156		72
GenBank mRNA	AK133929.1	-		2 - 3	377		72
	U20366.1	-	LIT1565 Hoxa11as	4 - 5	1156		72
	U20367.1	-	LIT1564 Hoxa11as	2 - 3	724		72
	U20369.1	-	LIT1563 Hoxa11as	2 - 3	361		72

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BQ947522.1	-	2 - 3	487		Chr. 6 - 52245601 - 52249455 [+] on Build GRCm38	72
GenBankmRNA	BB619336.1	-	2 - 3	377		Chr. 6 - 52245999 - 52249352 [+] on Build GRCm38	72
GenBankmRNA	BU514279.1	-	2 - 3	358		Chr. 6 - 52246018 - 52249633 [+] on Build GRCm38	72
GenBankmRNA	CB952841.1	-	2 - 3	409		Chr. 6 - 52245398 - 52249418 [+] on Build GRCm38	72
GenBankmRNA	BU841106.1	-	2 - 3	349		Chr. 6 - 52246027 - 52249637 [+] on Build GRCm38	72
GenBankmRNA	CB321051.1	-	2 - 3	360		Chr. 6 - 52245990 - 52249494 [+] on Build GRCm38	72
GenBankmRNA	BU510551.1	-	2 - 3	341		Chr. 6 - 52246009 - 52249573 [+] on Build GRCm38	72
GenBankmRNA	BU519467.1	-	2 - 3	407		Chr. 6 - 52245969 - 52249498 [+] on Build GRCm38	72

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	homeobox A11	Hoxa11	Hox-1.9, Hoxa-11	-853.0	Anti-sense	Chr. 6 - 52242105 - 52245810 on NCBI Build GRCm38
Downstream	homeobox A13	Hoxa13	Hd, Hox-1.10	9.4kb	Anti-sense	Chr. 6 - 52258853 - 52260880 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0600000623.mm.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mus musculus, 1700, Probe spans exons

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2041700	U20367.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2041700	U20368.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2041700	U20369.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2041700	U20366.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2041700	NR_015348.1	mouse_transcriptome
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	165195	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	54528	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	686239	-	-
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P117137	-	-
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2041700	U20367.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2041700	U20368.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2041700	U20369.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2041700	U20366.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2041700	NR_015348.1	mouse_transcriptome
Agilent Mouse Genome CGH Microarray 244A (G4415A)	A_53_P117137	-	-
Agilent Mouse Genome CGH Microarray 244A (G4415A)	A_67_P05899491	-	-
Agilent Mouse Genome CGH Microarray 105A (G4416A)	A_53_P117137	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT MG-430 PM Array Plate	1457646_PM_at	-	-
Affymetrix HT MG-430 PM Array Plate	1452400_PM_a_at	-	-
Mouse Genome 430 2.0 Array	1457646_at	-	-
Mouse Genome 430 2.0 Array	1457646_PM_at	-	-
Mouse Genome 430 2.0 Array	1452400_PM_a_at	-	-
Mouse Genome 430 2.0 Array	1452400_a_at	-	-
Affymetrix Mouse Clariom S Array	PSR0600004785.mm.1	TC0600000623.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004785.mm.1	NR_015348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004785.mm.1	NR_015348.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004787.mm.1	TC0600000623.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004787.mm.1	NR_015348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004787.mm.1	NR_015348.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004786.mm.1	TC0600000623.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004786.mm.1	NR_015348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004786.mm.1	NR_015348.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004784.mm.1	TC0600000623.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004784.mm.1	NR_015348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004784.mm.1	NR_015348.1	Refseq
Mouse Expression Set 430	1452400_a_at	-	-
Mouse Expression Set 430	1452400_PM_a_at	-	-
Mouse Expression Set 430	1457646_at	-	-
Mouse Expression Set 430	1457646_PM_at	-	-
Murine Genome U74v2 Set	93873_s_at	-	-
Murine Genome U74v2 Set	161670_PM_f_at	-	-
Murine Genome U74v2 Set	93873_PM_s_at	-	-
Murine Genome U74v2 Set	161670_f_at	-	-
Murine Genome U74v2 Set	170060_PM_r_at	-	-
Murine Genome U74v2 Set	170060_r_at	-	-
Mouse Genome 430A 2.0 Array	1452400_PM_a_at	-	-
Mouse Genome 430A 2.0 Array	1452400_a_at	-	-
Affymetrix HT Mouse Genome 430A Array	1452400_a_at	-	-
Affymetrix HT Mouse Genome 430A Array	1452400_PM_a_at	-	-
Affymetrix HT Mouse Genome 430B Array	1457646_PM_at	-	-
Affymetrix HT Mouse Genome 430B Array	1457646_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	931970	-	-