Mm01339824_g1

• Gene Symbol: Sptlc1
• Gene Name: serine palmitoyltransferase, long chain base subunit 1
• Gene Aliases: AW552086, C77762, E030036H05, Lcb1
• Chromosome Location: Chr.13: 53332748 - 53377417 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sptlc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_009269.2	NP_033295.2	10 - 11	996		60
GenBank mRNA	AF003823.1	-	10 - 11	1000		60
	AK028713.1	-	10 - 11	1007		60
	AK043064.1	-	6 - 7	575		60
	AK053207.1	-	10 - 11	1001		60
	AK079578.1	-	10 - 11	997		60
	AK084391.1	-	10 - 11	1000		60
	AK084445.1	-	10 - 11	993		60
	AK089030.1	-	10 - 11	1000		60
	AK161140.1	-	10 - 11	1033		60
	AK161811.1	-	6 - 7	575		60
	BC046323.1	-	10 - 11	996	6391985	60
	BC068243.1	-		3854		60
	X95641.1	-	10 - 11	995		60

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1300002017.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sptlc1

Panther Classification:

Molecular Function -

transaminase

Gene Ontology Categories:

Process(es)

lipid metabolic process
sphingolipid metabolic process
sphingomyelin biosynthetic process
biosynthetic process
sphinganine biosynthetic process
sphingosine biosynthetic process
ceramide biosynthetic process

Function(s)

catalytic activity
serine C-palmitoyltransferase activity
protein binding
transferase activity
transferase activity, transferring acyl groups
pyridoxal phosphate binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1300012602.mm.1	NM_009269.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012602.mm.1	NM_009269.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012602.mm.1	TC1300002017.mm.1	MTA TC