Mm01342511_m1

• Gene Symbol: Scn5a
• Gene Name: sodium channel, voltage-gated, type V, alpha
• Gene Aliases: Nav1.5, Nav1.5c, SkM1, SkM2, mH1
• Chromosome Location: Chr.9: 119483404 - 119579030 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Scn5a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001253860.1	NP_001240789.1	1 - 2	325		73
	NM_021544.4	NP_067519.2	2 - 3	493		73
GenBank mRNA	AJ271477.1	-	1 - 2	321		73
	AK147254.1	-	2 - 3	493		73
	AK147517.1	-	2 - 3	493		73

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0900003244.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mus musculus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Scn5a

Gene Ontology Categories:

Process(es)

regulation of heart rate
cardiac ventricle development
transport
ion transport
sodium ion transport
positive regulation of heart rate
positive regulation of sodium ion transport
response to organic cyclic compound
response to denervation involved in regulation of muscle adaptation
neuronal action potential
regulation of ion transmembrane transport
sodium ion transmembrane transport
positive regulation of action potential
positive regulation of epithelial cell proliferation
membrane depolarization
transmembrane transport
cardiac muscle contraction
regulation of ventricular cardiac muscle cell membrane repolarization
regulation of atrial cardiac muscle cell membrane depolarization
regulation of atrial cardiac muscle cell membrane repolarization
regulation of ventricular cardiac muscle cell membrane depolarization
cellular response to calcium ion
cardiac muscle cell action potential involved in contraction
regulation of cardiac muscle cell contraction
ventricular cardiac muscle cell action potential
membrane depolarization during action potential
membrane depolarization during cardiac muscle cell action potential
SA node cell action potential
AV node cell action potential
bundle of His cell action potential
membrane depolarization during AV node cell action potential
membrane depolarization during SA node cell action potential
membrane depolarization during Purkinje myocyte cell action potential
membrane depolarization during bundle of His cell action potential
AV node cell to bundle of His cell communication
regulation of heart rate by cardiac conduction
regulation of sodium ion transmembrane transport

Function(s)

ion channel activity
voltage-gated ion channel activity
voltage-gated sodium channel activity
sodium channel activity
protein binding
calmodulin binding
fibroblast growth factor binding
enzyme binding
protein kinase binding
ankyrin binding
ubiquitin protein ligase binding
transmembrane transporter binding
nitric-oxide synthase binding
voltage-gated sodium channel activity involved in cardiac muscle cell action potential
voltage-gated sodium channel activity involved in AV node cell action potential
voltage-gated sodium channel activity involved in bundle of His cell action potential
voltage-gated sodium channel activity involved in Purkinje myocyte action potential
voltage-gated sodium channel activity involved in SA node cell action potential
scaffold protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0900027324.mm.1	TC0900003244.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900027324.mm.1	NM_001253860.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027324.mm.1	NM_001253860.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027324.mm.1	NM_021544.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027324.mm.1	NM_021544.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027327.mm.1	TC0900003244.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900027327.mm.1	NM_001253860.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027327.mm.1	NM_001253860.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027327.mm.1	NM_021544.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027327.mm.1	NM_021544.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027326.mm.1	TC0900003244.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900027326.mm.1	NM_001253860.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027326.mm.1	NM_001253860.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027326.mm.1	NM_021544.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027326.mm.1	NM_021544.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027329.mm.1	TC0900003244.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900027329.mm.1	NM_021544.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027329.mm.1	NM_021544.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027325.mm.1	TC0900003244.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900027325.mm.1	NM_001253860.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027325.mm.1	NM_001253860.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027325.mm.1	NM_021544.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0900027325.mm.1	NM_021544.4	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	482108	-	-