Mm01702786_gH Best Coverage

• Gene Symbol: Vcp
• Gene Name: valosin containing protein
• Gene Aliases: 3110001E05, CDC48, p97, p97/VCP
• Chromosome Location: Chr.4: 42979964 - 43000507 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vcp
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_009503.4	NP_033529.3	13 - 14	2024		115
GenBank mRNA	AK010612.1	-	3 - 4	374		115
	AK028264.1	-	13 - 14	1953		115
	AK030751.1	-	13 - 14	1855		115
	AK083821.1	-	11 - 12	1530		115
	AK146109.1	-	13 - 14	1919		115
	AK149931.1	-	13 - 14	1917		115
	AK151109.1	-	13 - 14	1918		115
	AK151418.1	-	13 - 14	1918		115
	AK153012.1	-	13 - 14	1955		115
	AK153249.1	-	13 - 14	1995		115
	AK159177.1	-	13 - 14	1953		115
	AK159475.1	-	13 - 14	1951		115
	AK159509.1	-	13 - 14	1996		115
	AK160889.1	-	13 - 14	1839		115
	AK167794.1	-	13 - 14	1972		115
	AK169140.1	-	13 - 14	1926		115
	BC043053.1	-	13 - 14	1928	6418662	115
	BC049114.1	-	13 - 14	1972	6810751	115

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0400002513.mm.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vcp

Gene Ontology Categories:

Process(es)

DNA repair
double-strand break repair
ubiquitin-dependent protein catabolic process
transport
endoplasmic reticulum to Golgi vesicle-mediated transport
activation of cysteine-type endopeptidase activity involved in apoptotic process
cellular response to DNA damage stimulus
protein ubiquitination
protein N-linked glycosylation via asparagine
viral genome replication
translesion synthesis
ubiquitin-dependent ERAD pathway
retrograde protein transport, ER to cytosol
positive regulation of protein-containing complex assembly
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
protein hexamerization
positive regulation of protein catabolic process
protein homooligomerization
aggresome assembly
ER-associated misfolded protein catabolic process
positive regulation of protein K63-linked deubiquitination
positive regulation of Lys63-specific deubiquitinase activity

Function(s)

nucleotide binding
RNA binding
signaling receptor binding
protein binding
ATP binding
lipid binding
hydrolase activity
ATP hydrolysis activity
protein phosphatase binding
protein domain specific binding
polyubiquitin modification-dependent protein binding
deubiquitinase activator activity
identical protein binding
ADP binding
ubiquitin-like protein ligase binding
protein-containing complex binding
ubiquitin-specific protease binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0400020280.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020280.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020280.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020281.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020281.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020281.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020279.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020279.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020279.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020286.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020286.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020286.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020278.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020278.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020278.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020283.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020283.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020283.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020277.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020277.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020277.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020282.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020282.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020282.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020284.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020284.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020284.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020287.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020287.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020287.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020288.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020288.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020288.mm.1	NM_009503.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020289.mm.1	TC0400002513.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020289.mm.1	NM_009503.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020289.mm.1	NM_009503.4	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	901458	-	-