Mm03649943_m1

• Gene Symbol: BC005561
• Gene Name: cDNA sequence BC005561
• Gene Aliases: -
• Chromosome Location: Chr.5: 104508352 - 104522383 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: BC005561
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001166581.1	NP_001160053.1	1 - 2	222		127
GenBank mRNA	AK164034.1	-	1 - 2	223		127

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CO043956.1	-	1 - 2			Chr. 5 - 104508415 - 104517813 [-] on Build GRCm38	127
GenBankmRNA	BY729033.1	-	1 - 2	223		Chr. 5 - 104508352 - 104517875 [+] on Build GRCm38	127
GenBankmRNA	BU840354.1	-		195		Chr. - - [-] on Build	127

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	polycystic kidney disease 2	Pkd2	C030034P18Rik, PC2, TRPP2	-2.5kb	Sense	Chr. 5 - 104457224 - 104505819 on NCBI Build GRCm38
Downstream	RIKEN cDNA D930016D06 gene	D930016D06Rik	100041172, 1110004B06Rik, AI451450, Gm3179	3.4kb	Sense	Chr. 5 - 104525735 - 104554211 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0500001028.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK164034.1, NM_001166581.1 transcripts.

• Set Membership: Amplicon length greater than or equal to 101, Mus musculus, Probe spans exons

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2360427	AK134379.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2360427	NM_001166581.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2360427	AK134379.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2360427	NM_001166581.1	mouse_transcriptome
Agilent Six_ChIP_01_of_03_v2	A_68_P23952708	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952718	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920133	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920145	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952696	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952722	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952702	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952711	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952716	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952705	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920143	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920117	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920158	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920111	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952701	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952733	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952736	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952724	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952710	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P04920139	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952695	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P23952698	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT MG-430 PM Array Plate	1427461_PM_at	-	-
Affymetrix Mouse Gene 1.1 ST Array	10523746	-	-
Mouse Genome 430 2.0 Array	1427461_at	-	-
Mouse Genome 430 2.0 Array	1427461_PM_at	-	-
Affymetrix GeneChip Mouse Genome 430 2.0 Array	100042165_PM_at	-	-
Affymetrix GeneChip Mouse Genome 430 2.0 Array	100042165_at	-	-
Affymetrix Mouse Clariom S Array	PSR0500008691.mm.1	TC0500001028.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500008691.mm.1	NM_001166581.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500008691.mm.1	NM_001166581.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500008692.mm.1	TC0500001028.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500008692.mm.1	NM_001166581.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500008692.mm.1	NM_001166581.1	Refseq
Mouse Expression Set 430	1427461_PM_at	-	-
Mouse Expression Set 430	1427461_at	-	-
Mouse Genome 430A 2.0 Array	1427461_PM_at	-	-
Mouse Genome 430A 2.0 Array	1427461_at	-	-
Affymetrix HT Mouse Genome 430A Array	1427461_at	-	-
Affymetrix HT Mouse Genome 430A Array	1427461_PM_at	-	-