Mm03650162_s1

• Gene Symbol: Gm6548
• Gene Name: eukaryotic translation elongation factor 1 alpha 1 pseudogene
• Gene Aliases: EG625054
• Chromosome Location: Chr.17: 78850504 - 78852544 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Gm6548
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003363.1		1	249		108
GenBank mRNA	BC089461.1	-	1	249		108

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CA945344.1	-	1	110		Chr. 17 - 78851647 - 78852405 [-] on Build GRCm38	108
GenBankmRNA	CF750205.1	-	1	287		Chr. 17 - 78851780 - 78852544 [-] on Build GRCm38	108
GenBankmRNA	CB236562.1	-	1	173		Chr. 17 - 78851802 - 78852467 [-] on Build GRCm38	108

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	G patch domain containing 11	Gpatch11	2310002B06Rik, C80922, Ccdc75, L26697	-2.2kb	Anti-sense	Chr. 17 - 78835516 - 78848308 on NCBI Build GRCm38
Downstream	eukaryotic translation initiation factor 2-alpha kinase 2	Eif2ak2	2310047A08Rik, 4732414G15Rik, AI467567, AI747578, Pkr, Prkr, Tik	6.0	Sense	Chr. 17 - 78852550 - 78882572 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1700002557.mm.1

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, 1700, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P1980817	NR_003363.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P1980817	BC089461.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2053456	-	-
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2053456	-	-
Whole Mouse Genome G4122A	A_52_P192106	NR_003363.1	mouse_transcriptome
Whole Mouse Genome G4122A	A_52_P192106	BC089461.1	mouse_transcriptome

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Gene 1.0 ST Array	10452979	-	-
Affymetrix Mouse Gene 1.1 ST Array	10452978	-	-
Affymetrix Mouse Clariom S Array	PSR1700023383.mm.1	TC1700002557.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700023383.mm.1	NR_003363.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700023385.mm.1	TC1700002557.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700023385.mm.1	NR_003363.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700023384.mm.1	TC1700002557.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700023384.mm.1	NR_003363.1	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	893401	-	-

Array Name	Probe IDs	Targets	Target Type
MouseRef-8 v2 Expression BeadChip	ILMN_2998173	-	-
Illumina MouseWG-6 v2.0 expression beadchip	ILMN_2998173	-	-