Mm03930138_s1

Gene Symbol:

2010015M23Rik Srsf1

Gene Name:

RIKEN cDNA 2010015M23 gene

serine/arginine-rich splicing factor 1

Gene Aliases:

-

1110054N12Rik, 5730507C05Rik, 6330415C05Rik, AI482334, AW491331, Asf, Sf2, Sfrs1

Chromosome Location:

-

Chromosome Location:

Chr.11: 88046902 - 88053757 on Build GRCm38

Species:

Mouse

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: 2010015M23Rik
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	AK008259.1	-	1	152		96

Gene Symbol: Srsf1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001078167.2	NP_001071635.1	1			96
	NM_173374.4	NP_775550.2	1			96
GenBank mRNA	CF739274.1	-	1			96

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BY708199.1	-	1	147		Chr. 11 - 88046897 - 88047557 [-] on Build GRCm38	96
GenBankmRNA	BX525251.1	-	1	137		Chr. 11 - 88047011 - 88047543 [-] on Build GRCm38	96
GenBankmRNA	BE847660.1	-	1			Chr. 11 - 88047351 - 88047670 [+] on Build GRCm38	96
GenBankmRNA	CB192857.1	-	1	118		Chr. 11 - 88046806 - 88047528 [-] on Build GRCm38	96
GenBankmRNA	AA032992.1	-	1			Chr. 11 - 88047326 - 88047708 [+] on Build GRCm38	96
GenBankmRNA	AI158416.1	-	1			Chr. 11 - 88047375 - 88047669 [+] on Build GRCm38	96
GenBankmRNA	AA254130.1	-	1	137		Chr. 11 - 88047024 - 88047547 [-] on Build GRCm38	96
GenBankmRNA	AA015289.1	-	1			Chr. 11 - 88047326 - 88047670 [+] on Build GRCm38	96

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	dynein light chain LC8-type 2	Dynll2	1700064A15Rik, 6720463E02Rik, C87222, DLC8, DLC8b, Dlc2	-48.5kb	Sense	Chr. 11 - 87979525 - 87998298 on NCBI Build GRCm38
Downstream	vascular endothelial zinc finger 1	Vezf1	AI848691, AW046909, db1	20.7kb	Anti-sense	Chr. 11 - 88068256 - 88084729 on NCBI Build GRCm38

More Information

Additional Information:

This assay is in the 5'UTR region of the NM_001078167.2, NM_173374.4 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Detect Genomic DNA, Mus musculus, 1700, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene 2010015M23Rik
Click here to find siRNAs for Gene Srsf1

Panther Classification:

Molecular Function -

RNA splicing factor

Gene Ontology Categories:

Process(es)

mRNA 5'-splice site recognition
in utero embryonic development
regulation of transcription, DNA-templated
mRNA processing
regulation of translation
transport
RNA splicing
regulation of mRNA stability
regulation of mRNA splicing, via spliceosome
mRNA transport
cardiac muscle contraction

Function(s)

nucleotide binding
nucleic acid binding
RNA binding
mRNA binding
protein binding
poly(A) RNA binding
RS domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1100012781.mm.1	NM_001078167.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100012781.mm.1	NM_173374.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1100012781.mm.1	TC1100001359.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100012782.mm.1	NM_001078167.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1100012782.mm.1	NM_173374.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1100012782.mm.1	TC1100001359.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	515412	-	-
ABI Mouse Genome Survey Microarray	874198	-	-