Mm03949341_s1

• Gene Symbol: Malat1
• Gene Name: metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
• Gene Aliases: 2210401K01Rik, 9430072K23Rik, AI647968, Neat2
• Chromosome Location: Chr.19: 5795690 - 5802671 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Malat1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_002847.2		1	6367		86
GenBank mRNA	AK141413.1	-	1	1451		86
	EF177380.1	-	1	6367		86
	FJ209304.1	-	1	6367		86

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BY642518.1	-	1	175		Chr. 19 - 5796168 - 5796479 [-] on Build GRCm38	86
GenBankmRNA	BU513766.1	-	1	582		Chr. 19 - 5795934 - 5796887 [-] on Build GRCm38	85
GenBankmRNA	AW210565.1	-	1			Chr. 19 - 5796055 - 5796414 [+] on Build GRCm38	86
GenBankmRNA	BU697194.1	-	1	257		Chr. 19 - 5796056 - 5796561 [-] on Build GRCm38	86
GenBankmRNA	AY722410.1	-	1	6367		Chr. - - [-] on Build	86
GenBankmRNA	CD774784.1	-	1			Chr. 19 - 5795982 - 5796639 [+] on Build GRCm38	86
GenBankmRNA	CA587592.1	-	1			Chr. 19 - 5796169 - 5796420 [+] on Build GRCm38	86
GenBankmRNA	DV065135.1	-	1	545		Chr. 19 - 5795980 - 5796808 [-] on Build GRCm38	86
GenBankmRNA	AI647968.1	-	1			Chr. 19 - 5795999 - 5796555 [+] on Build GRCm38	86
GenBankmRNA	BY616255.1	-	1	218		Chr. 19 - 5796168 - 5796520 [-] on Build GRCm38	86
GenBankmRNA	AU260380.1	-	1	118		Chr. 19 - 5796118 - 5796422 [-] on Build GRCm38	86
GenBankmRNA	DV063405.1	-		446		Chr. - - [-] on Build	86
GenBankmRNA	BB418323.2	-	1	359		Chr. 19 - 5796000 - 5796654 [-] on Build GRCm38	86
GenBankmRNA	DV065019.1	-	1	545		Chr. 19 - 5795980 - 5796808 [-] on Build GRCm38	86
GenBankmRNA	BU921384.1	-	1	167		Chr. 19 - 5795982 - 5796471 [-] on Build GRCm38	86
GenBankmRNA	BP426953.1	-	1	188		Chr. 19 - 5796000 - 5796492 [-] on Build GRCm38	86
GenBankmRNA	BG806067.1	-	1	456		Chr. 19 - 5796162 - 5796760 [-] on Build GRCm38	86
GenBankmRNA	BU520506.1	-	1	462		Chr. 19 - 5795817 - 5796765 [-] on Build GRCm38	86
GenBankmRNA	AW824837.1	-	1	357		Chr. 19 - 5796259 - 5796662 [-] on Build GRCm38	86

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	SCY1-like 1 (S. cerevisiae)	Scyl1	2810011O19Rik, C85140, Ntkl, mdf, mfd, p105	-24.6kb	Sense	Chr. 19 - 5758427 - 5771414 on NCBI Build GRCm38
Downstream	nuclear paraspeckle assembly transcript 1 (non-protein coding)	Neat1	2310043N10Rik, VINC	44.5kb	Sense	Chr. 19 - 5842302 - 5845478 on NCBI Build GRCm38

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Amplicon length between 71 and 85, Amplicon length between 86 and 100, Detect Genomic DNA, Mus musculus, Both primers and probe map within a single exon

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
nuclear speck organization
regulation of synapse organization
positive regulation of myoblast proliferation

Function(s)

molecular_function