Mm04213075_u1

• Gene Symbol: Hmga1
• Gene Name: high mobility group AT-hook 1
• Gene Aliases: AL023995, Hmga1a, Hmga1b, Hmgi, Hmgiy, Hmgy
• Chromosome Location: Chr.17: 27556574 - 27563672 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hmga1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001166535.1	NP_001160007.1	1	153		68
	NM_001166540.1	NP_001160012.1	1	153		68
	NM_001166543.1	NP_001160015.1	1	153		68

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1700000461.mm.1

Additional Information:

This assay is in the 5'UTR region of the NM_001166535.1, NM_001166540.1, NM_001166543.1 transcripts.

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Mus musculus, Amplicon spans exons and probe does not span exons

Gene Ontology Categories:

Process(es)

DNA metabolic process
base-excision repair
transcription by RNA polymerase II
spermatogenesis
positive regulation of transcription by RNA polymerase II
nucleic acid phosphodiester bond hydrolysis
regulation of nucleic acid-templated transcription

Function(s)

DNA-(apurinic or apyrimidinic site) endonuclease activity
transcription factor binding
enzyme binding
nuclear receptor coactivator activity
retinoic acid receptor binding
peroxisome proliferator activated receptor binding
retinoid X receptor binding
5'-deoxyribose-5-phosphate lyase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	TC1700000461.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166535.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166535.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166537.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166537.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166540.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166540.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166543.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_001166543.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_016660.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700003862.mm.1	NM_016660.3	Refseq