Mm04240426_s1

• Gene Symbol: Gm5176
• Gene Name: high mobility group box 2 pseudogene
• Gene Aliases: EG382421
• Chromosome Location: Chr.10: 111500788 - 111501345 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Gm5176
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_033603.1		1	256		74
GenBank mRNA	BC054110.1	-		319	30017181	74

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CA538614.1	-	1	304		Chr. 10 - 111500740 - 111501249 [+] on Build GRCm38	74
GenBankmRNA	CF950825.1	-	1	171		Chr. 10 - 111500873 - 111501541 [+] on Build GRCm38	74

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	nucleosome assembly protein 1-like 1	Nap1l1	AA407126, AI256722, D10Ertd68e, NAP-1	-2.6kb	Sense	Chr. 10 - 111473192 - 111498150 on NCBI Build GRCm38
Downstream	pleckstrin homology-like domain, family A, member 1	Phlda1	DT1P1B11, TDAG51, Tdag	4.9kb	Sense	Chr. 10 - 111506286 - 111508649 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1000001300.mm.1

Additional Information:

This assay is in the 5'UTR region of the BC054110.1 transcripts.

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P30877	BC054110.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P30877	NR_033603.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P30877	BC054110.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_52_P30877	NR_033603.1	mouse_transcriptome
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	345882	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	930275	-	-
Agilent SurePrint G3 Mouse CGH Microarray 4x180K	172980	-	-
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P102692	-	-
Agilent Mouse Genome CGH Microarray 244A (G4415A)	A_53_P102692	-	-
Whole Mouse Genome G4122A	A_52_P195358	BC054110.1	mouse_transcriptome
Whole Mouse Genome G4122A	A_51_P227644	AK048998.1	mouse_transcriptome
Whole Mouse Genome G4122A	A_52_P30877	BC054110.1	mouse_transcriptome
Whole Mouse Genome G4122A	A_52_P30877	NR_033603.1	mouse_transcriptome
Whole Mouse Genome G4122A	A_52_P30877	BC054110.1	mouse_transcriptome
Whole Mouse Genome G4122A	A_52_P30877	NR_033603.1	mouse_transcriptome
Agilent Mouse Genome CGH Microarray 105A (G4416A)	A_53_P102692	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Gene 1.0 ST Array	10366345	-	-
Affymetrix Mouse Gene 1.1 ST Array	10366344	-	-
Affymetrix Mouse Clariom S Array	PSR1000009698.mm.1	TC1000001300.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000009700.mm.1	TC1000001300.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000009699.mm.1	TC1000001300.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000009699.mm.1	NR_033603.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000009699.mm.1	NR_033603.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000009701.mm.1	TC1000001300.mm.1	MTA TC