Mm04335555_m1

• Gene Symbol: Cldnd1
• Gene Name: claudin domain containing 1
• Gene Aliases: 1110019C08Rik, AA407103, AI849195, AW489850, Cldn25
• Chromosome Location: Chr.16: 58727910 - 58734247 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cldnd1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_045517.1		1 - 2	178		89
	NR_045518.1		1 - 2	178		89
GenBank mRNA	AK003808.1	-	1 - 2	70		89
	AK009743.1	-	1 - 2	62		88
	AK152121.1	-	1 - 2	73		89
	AK152722.1	-	1 - 2	68		89
	BY122667.1	-	1 - 2	179		89
	CD560460.1	-	1 - 2	59		89

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BY238265.1	-	1 - 2	56		Chr. 16 - 58728032 - 58731354 [+] on Build GRCm38	89
GenBankmRNA	BY114147.1	-	1 - 2	55		Chr. 16 - 58728033 - 58729696 [+] on Build GRCm38	89
GenBankmRNA	BY783534.1	-	1 - 2	80		Chr. 16 - 58728008 - 58729664 [+] on Build GRCm38	89
GenBankmRNA	AA209590.1	-	1 - 2	94		Chr. 16 - 58727997 - 58731380 [+] on Build GRCm38	87
GenBankmRNA	BY249766.1	-	1 - 2	58		Chr. 16 - 58728031 - 58731372 [+] on Build GRCm38	89
GenBankmRNA	CK793690.1	-		107		Chr. - - [-] on Build	89
GenBankmRNA	BY321183.1	-	1 - 2	68		Chr. 16 - 58728022 - 58729735 [+] on Build GRCm38	89
GenBankmRNA	BB863788.1	-	1 - 2	61		Chr. 16 - 58728027 - 58731353 [+] on Build GRCm38	89
GenBankmRNA	CK031921.1	-	1 - 2	68		Chr. 16 - 58728020 - 58732915 [+] on Build GRCm38	89
GenBankmRNA	CN696996.1	-	1 - 2	56		Chr. 16 - 58728032 - 58732669 [+] on Build GRCm38	89
GenBankmRNA	BY321926.1	-	1 - 2	81		Chr. 16 - 58728008 - 58729702 [+] on Build GRCm38	89
GenBankmRNA	BY790907.1	-	1 - 2	80		Chr. 16 - 58728008 - 58729699 [+] on Build GRCm38	89
GenBankmRNA	AA756671.1	-	1 - 2	66		Chr. 16 - 58728019 - 58731370 [+] on Build GRCm38	86
GenBankmRNA	BY162275.1	-	1 - 2	68		Chr. 16 - 58728022 - 58729724 [+] on Build GRCm38	89
GenBankmRNA	BY284440.1	-	1 - 2			Chr. 16 - 58727931 - 58729681 [+] on Build GRCm38	89
GenBankmRNA	BY082153.1	-	1 - 2	93		Chr. 16 - 58727995 - 58729693 [+] on Build GRCm38	89
GenBankmRNA	BY744806.1	-	1 - 2	73		Chr. 16 - 58728015 - 58732890 [+] on Build GRCm38	89
GenBankmRNA	CA533125.1	-	1 - 2	69		Chr. 16 - 58728019 - 58731405 [+] on Build GRCm38	89
GenBankmRNA	BY776884.1	-	1 - 2	80		Chr. 16 - 58728008 - 58729717 [+] on Build GRCm38	89
GenBankmRNA	BY116179.1	-	1 - 2	55		Chr. 16 - 58728033 - 58729718 [+] on Build GRCm38	89
GenBankmRNA	CJ084524.1	-	1 - 2	81		Chr. 16 - 58728008 - 58729711 [+] on Build GRCm38	89
GenBankmRNA	BY096893.1	-	1 - 2	93		Chr. 16 - 58727995 - 58729722 [+] on Build GRCm38	89
GenBankmRNA	BY298899.1	-	1 - 2	81		Chr. 16 - 58728008 - 58729747 [+] on Build GRCm38	89
GenBankmRNA	BY097706.1	-	1 - 2	93		Chr. 16 - 58727995 - 58729727 [+] on Build GRCm38	89
GenBankmRNA	BY292403.1	-	1 - 2	157		Chr. 16 - 58727931 - 58729653 [+] on Build GRCm38	89
GenBankmRNA	BY012981.1	-	1 - 2	78		Chr. 16 - 58728011 - 58729727 [+] on Build GRCm38	89
GenBankmRNA	AV450887.1	-	1 - 2	75		Chr. 16 - 58728013 - 58731408 [+] on Build GRCm38	89
GenBankmRNA	BY308560.1	-	1 - 2	68		Chr. 16 - 58728022 - 58729723 [+] on Build GRCm38	89
GenBankmRNA	BE629024.1	-	1 - 2	65		Chr. 16 - 58728023 - 58731412 [+] on Build GRCm38	89
GenBankmRNA	W33804.1	-		51		Chr. - - [-] on Build	87
GenBankmRNA	BY709381.1	-		62		Chr. - - [-] on Build	88
GenBankmRNA	AI098356.1	-	1 - 2	148		Chr. 16 - 58727949 - 58731364 [+] on Build GRCm38	88
GenBankmRNA	BY704067.1	-	1 - 2	66		Chr. 16 - 58728022 - 58732724 [+] on Build GRCm38	89
GenBankmRNA	BY243914.1	-	1 - 2	58		Chr. 16 - 58728031 - 58731418 [+] on Build GRCm38	89
GenBankmRNA	BY014468.1	-	1 - 2	78		Chr. 16 - 58728011 - 58729734 [+] on Build GRCm38	89
GenBankmRNA	AA498422.1	-	1 - 2	80		Chr. 16 - 58728019 - 58731404 [+] on Build GRCm38	86
GenBankmRNA	BY745267.1	-	1 - 2	68		Chr. 16 - 58728022 - 58732871 [+] on Build GRCm38	89

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	G protein-coupled receptor 15	Gpr15	4933439K08Rik	-9.2kb	Anti-sense	Chr. 16 - 58717435 - 58718724 on NCBI Build GRCm38
Downstream	olfactory receptor 172	Olfr172	MOR184-2	30.4kb	Anti-sense	Chr. 16 - 58760152 - 58761240 on NCBI Build GRCm38

More Information

Additional Information:

This assay is in the 5'UTR region of the AK003808.1, AK009743.1, AK152121.1, AK152722.1 transcripts.

• Set Membership: Amplicon length between 86 and 100, Mus musculus, Probe spans exons

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function