Mm04335631_g1

• Gene Symbol: Phyhd1
• Gene Name: phytanoyl-CoA dioxygenase domain containing 1
• Gene Aliases: -
• Chromosome Location: Chr.2: 30266203 - 30282149 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Phyhd1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001281829.1	NP_001268758.1	1 - 2	71		84
GenBank mRNA	AI182929.1	-	1 - 2	46		84
	BC039982.1	-	1 - 2	66		84
	BY196857.1	-	1 - 2	73		84

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BG921301.1	-	1 - 2	55		Chr. 2 - 30266737 - 30280288 [+] on Build GRCm38	84

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	leucine rich repeat containing 8A	Lrrc8a	Lrrc8, mKIAA1437	-2.9kb	Sense	Chr. 2 - 30237769 - 30263790 on NCBI Build GRCm38
Downstream	dolichol kinase	Dolk	BC026973, Tmem15, mKIAA1094	17.3kb	Anti-sense	Chr. 2 - 30284229 - 30286354 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200005467.mm.1

Additional Information:

This assay is in the 5'UTR region of the BC039982.1,NM_001281829.1 transcripts.

• Set Membership: Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

oxygenase

Gene Ontology Categories:

Process(es)

biological_process
oxidation-reduction process

Function(s)

molecular_function
N-ethylmaleimide reductase activity
oxidoreductase activity
reduced coenzyme F420 dehydrogenase activity
sulfur oxygenase reductase activity
malolactic enzyme activity
NADPH:sulfur oxidoreductase activity
metal ion binding
dioxygenase activity
epoxyqueuosine reductase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0200004147.mm.1	NM_001281829.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004147.mm.1	TC0200005467.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_001252568.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_001252570.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_001252570.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_001252571.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_001252571.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_001281829.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	NM_172267.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200004152.mm.1	TC0200005467.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	324024	-	-