Rn00476604_m1 Best Coverage

• Gene Symbol: Pcmt1
• Gene Name: protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
• Gene Aliases: PCM
• Chromosome Location: Chr.1: 1734863 - 1767759 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pcmt1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013073.3	NP_037205.2	6 - 7	608		74
GenBank mRNA	BC088417.1	-	6 - 7	608	7123213	74
	D11475.1	-	6 - 7	468		74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100003951.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pcmt1

Panther Classification:

Molecular Function -

methyltransferase

Gene Ontology Categories:

Process(es)

protein methylation
S-adenosylhomocysteine metabolic process
S-adenosylmethionine metabolic process

Function(s)

protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
S-adenosylmethionine-dependent methyltransferase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P014527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	450182	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	204630	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	50470	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	447946	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	46308	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	916762	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	102875	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	465862	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	455711	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	54004	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	165176	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	169028	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	127725	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P014527	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P014527	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P014527	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P484806	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P493747	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	66241	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	11119	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10716639	-	-
Affymetrix Rat Gene 1.0 ST Array	10716642	-	-
Affymetrix Rat Gene 1.0 ST Array	10716641	-	-
Affymetrix Rat Gene 1.0 ST Array	10716635	-	-
Affymetrix Rat Gene 1.0 ST Array	10716638	-	-
Affymetrix Rat Gene 1.0 ST Array	10716637	-	-
Affymetrix Rat Gene 1.0 ST Array	10716640	-	-
Affymetrix Rat Gene 1.0 ST Array	10716636	-	-
Affymetrix Rat Gene 1.0 ST Array	10716643	-	-
Affymetrix Rat Gene 1.1 ST Array	10716634	-	-
Rat Genome 230 2.0 Array	1371966_at	-	-
Rat Genome 230 2.0 Array	1387258_PM_a_at	-	-
Rat Genome 230 2.0 Array	1387258_a_at	-	-
Rat Genome 230 2.0 Array	1371966_PM_at	-	-
Affymetrix HT Rat Focus Array	1387258_a_at	-	-
Affymetrix HT Rat Focus Array	1371966_PM_at	-	-
Affymetrix HT Rat Focus Array	1371966_at	-	-
Affymetrix HT Rat Focus Array	1387258_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100032245.rn.1	TC0100003951.rn.1	RTA TC
Rat Expression Set 230	1371966_at	-	-
Rat Expression Set 230	1387258_a_at	-	-
Rat Expression Set 230	1371966_PM_at	-	-
Rat Expression Set 230	1387258_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10716634	-	-
Rat Genome U34 Set	M26686_g_at	-	-
Rat Genome U34 Set	rc_AI178024_at	-	-
Rat Genome U34 Set	M26686_at	-	-
Rat Genome U34 Set	rc_AA849797_at	-	-
Rat Genome U34 Set	rc_AI104517_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1365789	-	-
RatRef-12 Expression BeadChip	ILMN_50157	-	-