Rn00560743_g1 Best Coverage

• Gene Symbol: Apoc3
• Gene Name: apolipoprotein C-III
• Gene Aliases: ApoC-III, apo-CIII
• Chromosome Location: Chr.8: 50529318 - 50531533 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apoc3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271053.1	NP_001257982.1	2 - 3	180		85
	NM_012501.2	NP_036633.2	2 - 3	137		85
	XM_008766144.1	XP_008764366.1	2 - 3	172		85
	XM_008766146.1	XP_008764368.1	2 - 3	150		85
GenBank mRNA	AW917416.1	-	2 - 3	89		85
	FQ209522.1	-	2 - 3	104		85
	FQ209891.1	-	2 - 3	106		85
	FQ210075.1	-	2 - 3	137		85
	FQ210397.1	-	2 - 3	104		85
	FQ210428.1	-	2 - 3	108		85
	FQ210554.1	-	2 - 3	105		85
	FQ210884.1	-	2 - 3	103		85
	FQ211165.1	-	2 - 3	104		85
	FQ211318.1	-	2 - 3	106		85
	FQ211343.1	-	2 - 3	106		85
	FQ211392.1	-	2 - 3	108		85
	FQ211416.1	-	2 - 3	109		85
	FQ211454.1	-	2 - 3	108		85
	FQ218088.1	-	2 - 3	136		85
	FQ218207.1	-	2 - 3	136		85
	FQ218211.1	-	2 - 3	180		85
	FQ218286.1	-	2 - 3	107		85
	FQ219230.1	-	2 - 3	104		85

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800002454.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Transporter, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apoc3

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
triglyceride mobilization
lipid transport
inflammatory response
G-protein coupled receptor signaling pathway
response to nutrient
cholesterol metabolic process
negative regulation of triglyceride catabolic process
negative regulation of very-low-density lipoprotein particle remodeling
negative regulation of very-low-density lipoprotein particle clearance
negative regulation of high-density lipoprotein particle clearance
negative regulation of low-density lipoprotein particle clearance
triglyceride catabolic process
regulation of Cdc42 protein signal transduction
cholesterol efflux
phospholipid efflux
high-density lipoprotein particle remodeling
chylomicron remnant clearance
lipoprotein metabolic process
response to drug
cholesterol homeostasis
lipoprotein transport
response to peptide hormone
negative regulation of fatty acid biosynthetic process
negative regulation of lipid metabolic process
negative regulation of receptor-mediated endocytosis
negative regulation of lipid catabolic process
negative regulation of lipoprotein lipase activity
negative regulation of cholesterol import
triglyceride homeostasis
cellular response to glucose stimulus

Function(s)

lipid transporter activity
phospholipid binding
enzyme regulator activity
lipase inhibitor activity
high-density lipoprotein particle receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P327799	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P327799	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P327799	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P327799	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P327799	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P11435	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10940680	-	-
Affymetrix Rat Gene 1.1 ST Array	10940680	-	-
Rat Genome 230 2.0 Array	1370009_at	-	-
Rat Genome 230 2.0 Array	1370009_PM_at	-	-
Affymetrix HT Rat Focus Array	1370009_PM_at	-	-
Affymetrix HT Rat Focus Array	1370009_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800019787.rn.1	TC0800002454.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019791.rn.1	TC0800002454.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019781.rn.1	TC0800002454.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019782.rn.1	TC0800002454.rn.1	RTA TC
Rat Expression Set 230	1370009_PM_at	-	-
Rat Expression Set 230	1370009_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10940680	-	-
Rat Genome U34 Set	J02596cds_at	-	-
Rat Genome U34 Set	rc_AI169758_at	-	-
Rat Genome U34 Set	J02596cds_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21815446	-	-