Rn00560963_s1 Best Coverage

• Gene Symbol: Cebpa
• Gene Name: CCAAT/enhancer binding protein (C/EBP), alpha
• Gene Aliases: DBPCEP
• Chromosome Location: Chr.1: 91363492 - 91366164 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cebpa
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001287577.1	NP_001274506.1	1	1146		79
	NM_001287578.1	NP_001274507.1	1	1146		79
	NM_001287579.1	NP_001274508.1	1	1146		79
	NM_012524.3	NP_036656.1	1	1146		79

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100001307.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cebpa

Gene Ontology Categories:

Process(es)

urea cycle
negative regulation of transcription by RNA polymerase II
liver development
embryonic placenta development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
acute-phase response
mitochondrion organization
response to nutrient
cholesterol metabolic process
negative regulation of cell population proliferation
myeloid cell differentiation
cell differentiation
macrophage differentiation
lung development
granulocyte differentiation
animal organ regeneration
response to vitamin B2
regulation of cell population proliferation
glucose homeostasis
fat cell differentiation
positive regulation of fat cell differentiation
positive regulation of osteoblast differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
positive regulation of transcription by RNA polymerase III
cell maturation
inner ear development
white fat cell differentiation
brown fat cell differentiation
response to glucocorticoid
cellular response to lithium ion
cellular response to organic cyclic compound

Function(s)

transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
DNA-binding transcription activator activity, RNA polymerase II-specific
DNA binding
DNA-binding transcription factor activity
protein binding
transcription factor binding
protein domain specific binding
protein homodimerization activity
histone deacetylase binding
sequence-specific DNA binding
protein-containing complex binding
protein heterodimerization activity
HMG box domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P025108	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P025108	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P025108	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P025108	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15494	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10706133	-	-
Affymetrix Rat Gene 1.0 ST Array	10706132	-	-
Affymetrix Rat Gene 1.1 ST Array	10706131	-	-
Rat Genome 230 2.0 Array	1369658_PM_at	-	-
Rat Genome 230 2.0 Array	1369658_at	-	-
Affymetrix HT Rat Focus Array	1369658_at	-	-
Affymetrix HT Rat Focus Array	1369658_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100010171.rn.1	TC0100001307.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100010172.rn.1	TC0100001307.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100010173.rn.1	TC0100001307.rn.1	RTA TC
Rat Expression Set 230	1369658_at	-	-
Rat Expression Set 230	1369658_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10706131	-	-
Rat Genome U34 Set	rc_AI236300_at	-	-
Rat Genome U34 Set	X12752_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21826638	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1374632	-	-
RatRef-12 Expression BeadChip	ILMN_61845	-	-