Rn00561138_m1 Best Coverage

• Gene Symbol: Egr1
• Gene Name: early growth response 1
• Gene Aliases: Krox-24, NGFI-A, Ngf1, Ngfi, zif-268
• Chromosome Location: Chr.18: 27657903 - 27660101 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Egr1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012551.2	NP_036683.1	1 - 2	219		64
GenBank mRNA	AY551092.1	-	1 - 2	219		64
	M18416.1	-		571		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800000272.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Egr1

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
response to amphetamine
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
learning or memory
circadian rhythm
response to glucose
positive regulation of gene expression
positive regulation of cell death
T cell differentiation
BMP signaling pathway
response to nutrient levels
response to follicle-stimulating hormone
response to insulin
cellular response to insulin stimulus
regulation of protein sumoylation
response to carbon monoxide
response to gonadotropin
cellular response to drug
skeletal muscle cell differentiation
response to cocaine
response to drug
regulation of apoptotic process
negative regulation of apoptotic process
positive regulation of neuron apoptotic process
response to ethanol
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of long-term neuronal synaptic plasticity
oligodendrocyte differentiation
response to electrical stimulus
long-term synaptic potentiation
regulation of transcription from RNA polymerase II promoter in response to hypoxia
interleukin-1-mediated signaling pathway
cellular response to antibiotic
cellular response to mechanical stimulus
cellular response to organic substance
cellular response to isoquinoline alkaloid
cellular response to cAMP
cellular response to growth factor stimulus
cellular response to gonadotropin stimulus
cellular response to follicle-stimulating hormone stimulus
cellular response to steroid hormone stimulus
cellular response to hyperoxia
cellular response to hypoxia
cellular response to gamma radiation
cellular response to heparin
cellular response to mycophenolic acid
response to norepinephrine
glomerular mesangial cell proliferation
positive regulation of glomerular metanephric mesangial cell proliferation
negative regulation of canonical Wnt signaling pathway

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor binding
histone acetyltransferase binding
sequence-specific DNA binding
transcription regulatory region DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P082693	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	386790	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	195598	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P082693	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P082693	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P082693	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P233080	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700929546	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	102279	-	-
Agilent Rat cDNA Microarray (G4105A)	700929546	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10800922	-	-
Affymetrix Rat Gene 1.0 ST Array	10800923	-	-
Affymetrix Rat Gene 1.0 ST Array	10800920	-	-
Affymetrix Rat Gene 1.0 ST Array	10800921	-	-
Affymetrix Rat Gene 1.1 ST Array	10800919	-	-
Rat Genome 230 2.0 Array	1368321_PM_at	-	-
Rat Genome 230 2.0 Array	1368321_at	-	-
Affymetrix HT Rat Focus Array	1368321_at	-	-
Affymetrix HT Rat Focus Array	1368321_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1800002033.rn.1	TC1800000272.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800002034.rn.1	TC1800000272.rn.1	RTA TC
Rat Expression Set 230	1368321_PM_at	-	-
Rat Expression Set 230	1368321_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10800919	-	-
Rat Genome U34 Set	rc_AI176662_s_at	-	-
Rat Genome U34 Set	U75397UTR#1_s_at	-	-
Rat Genome U34 Set	U75398_s_at	-	-
Rat Genome U34 Set	AF023087_s_at	-	-
Rat Genome U34 Set	M18416_at	-	-
Rat Genome U34 Set	AF023087_s_at	-	-
Rat Genome U34 Set	M18416_at	-	-
Rat Genome U34 Set	rc_AI176662_s_at	-	-
Rat Genome U34 Set	U75398_s_at	-	-
Rat Genome U34 Set	U75397UTR#1_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20730028	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1369005	-	-
RatRef-12 Expression BeadChip	ILMN_62116	-	-