Rn00561953_m1 Best Coverage

• Gene Symbol: Sp1
• Gene Name: Sp1 transcription factor
• Gene Aliases: -
• Chromosome Location: Chr.7: 144014173 - 144044635 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sp1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012655.2	NP_036787.2	4 - 5	1890		87
GenBank mRNA	D12768.1	-	4 - 5	1906		87

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700001901.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Recommended Assay, Rattus norvegicus, Rat Hypoxia Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sp1

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

ossification
in utero embryonic development
trophectodermal cell differentiation
liver development
embryonic placenta development
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
megakaryocyte differentiation
lung development
enucleate erythrocyte differentiation
positive regulation by host of viral transcription
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
rhythmic process
embryonic camera-type eye morphogenesis
embryonic skeletal system development
embryonic process involved in female pregnancy
definitive hemopoiesis

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
core promoter proximal region sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II repressing transcription factor binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
protein C-terminus binding
transcription factor binding
histone acetyltransferase binding
enhancer binding
protein homodimerization activity
histone deacetylase binding
bHLH transcription factor binding
sequence-specific DNA binding
transcription regulatory region DNA binding
metal ion binding
HMG box domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P045413	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P045418	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	251894	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	320378	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	477906	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	908006	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	743585	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	106241	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	823527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	454051	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	211254	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	193986	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	920378	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	410341	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	219907	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	898772	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	328063	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	563764	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	520284	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151924	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	85456	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	732064	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	574838	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	904218	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	4957	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	128480	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	115393	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P045413	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P045418	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P045413	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P045418	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P045413	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P045418	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P454192	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	65492	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	94287	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	85501	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	28907	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10899548	-	-
Affymetrix Rat Gene 1.0 ST Array	10899550	-	-
Affymetrix Rat Gene 1.0 ST Array	10899551	-	-
Affymetrix Rat Gene 1.0 ST Array	10899549	-	-
Affymetrix Rat Gene 1.0 ST Array	10899553	-	-
Affymetrix Rat Gene 1.0 ST Array	10899547	-	-
Affymetrix Rat Gene 1.0 ST Array	10899546	-	-
Affymetrix Rat Gene 1.1 ST Array	10899545	-	-
Affymetrix Rat Gene 1.1 ST Array	10899552	-	-
Rat Genome 230 2.0 Array	1371880_PM_at	-	-
Rat Genome 230 2.0 Array	1392631_at	-	-
Rat Genome 230 2.0 Array	1379384_at	-	-
Rat Genome 230 2.0 Array	1379384_PM_at	-	-
Rat Genome 230 2.0 Array	1392180_PM_at	-	-
Rat Genome 230 2.0 Array	1392631_PM_at	-	-
Rat Genome 230 2.0 Array	1371880_at	-	-
Rat Genome 230 2.0 Array	1392180_at	-	-
Rat Genome 230 2.0 Array	1369247_at	-	-
Rat Genome 230 2.0 Array	1369247_PM_at	-	-
Affymetrix HT Rat Focus Array	1392180_at	-	-
Affymetrix HT Rat Focus Array	1379384_at	-	-
Affymetrix HT Rat Focus Array	1371880_PM_at	-	-
Affymetrix HT Rat Focus Array	1369247_at	-	-
Affymetrix HT Rat Focus Array	1371880_at	-	-
Affymetrix HT Rat Focus Array	1369247_PM_at	-	-
Affymetrix HT Rat Focus Array	1379384_PM_at	-	-
Affymetrix HT Rat Focus Array	1392180_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700014900.rn.1	TC0700001901.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700014902.rn.1	TC0700001901.rn.1	RTA TC
Rat Expression Set 230	1371880_PM_at	-	-
Rat Expression Set 230	1371880_at	-	-
Rat Expression Set 230	1369247_at	-	-
Rat Expression Set 230	1369247_PM_at	-	-
Rat Expression Set 230	1392180_at	-	-
Rat Expression Set 230	1392631_at	-	-
Rat Expression Set 230	1392631_PM_at	-	-
Rat Expression Set 230	1392180_PM_at	-	-
Rat Expression Set 230	1379384_at	-	-
Rat Expression Set 230	1379384_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10899552	-	-
Affymetrix Rat Gene 1.0 ST Array	10899545	-	-
Rat Genome U34 Set	D12768_at	-	-
Rat Genome U34 Set	rc_AA900254_at	-	-
Rat Genome U34 Set	rc_AI045226_at	-	-
Rat Genome U34 Set	rc_AI145910_at	-	-
Rat Genome U34 Set	rc_AI137591_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22091746	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1373417	-	-
RatRef-12 Expression BeadChip	ILMN_52507	-	-