Rn00562483_g1

• Gene Symbol: Apoa1
• Gene Name: apolipoprotein A-I
• Gene Aliases: apoA-I
• Chromosome Location: Chr.8: 50525091 - 50526875 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apoa1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012738.1	NP_036870.1	2 - 3	81		73
GenBank mRNA	BC089820.1	-	1 - 2	65	7321674	73
	FQ209434.1	-	2 - 3	82		73
	FQ209676.1	-	2 - 3	86		73
	FQ209742.1	-	2 - 3	86		73
	FQ209761.1	-	2 - 3	82		73
	FQ209776.1	-	2 - 3	86		73
	FQ209818.1	-	2 - 3	87		73
	FQ209900.1	-	2 - 3	82		73
	FQ209928.1	-	2 - 3	86		73
	FQ209958.1	-	2 - 3	86		73
	FQ210010.1	-	2 - 3	86		73
	FQ210126.1	-	2 - 3	83		73
	FQ210161.1	-	2 - 3	109		73
	FQ210354.1	-	2 - 3	86		73
	FQ210367.1	-	2 - 3	82		73
	FQ210371.1	-	2 - 3	82		73
	FQ210443.1	-	2 - 3	83		73
	FQ210470.1	-	2 - 3	82		73
	FQ210544.1	-	2 - 3	84		73
	FQ210653.1	-	2 - 3	84		73
	FQ210722.1	-	2 - 3	86		73
	FQ210743.1	-	2 - 3	189		73
	FQ210863.1	-	2 - 3	86		73
	FQ210880.1	-	2 - 3	82		73
	FQ210914.1	-	2 - 3	82		73
	FQ211297.1	-	2 - 3	84		73
	FQ211535.1	-	2 - 3	89		73
	FQ211571.1	-	2 - 3	82		73
	FQ218078.1	-	2 - 3	82		73
	FQ218079.1	-	2 - 3	86		73
	FQ218325.1	-	2 - 3	86		73
	FQ218519.1	-	2 - 3	82		73
	FQ218525.1	-	2 - 3	82		73
	FQ218615.1	-	2 - 3	81		73
	FQ218659.1	-	2 - 3			72
	FQ218663.1	-	2 - 3	82		73
	FQ218837.1	-	2 - 3	88		73
	FQ219021.1	-	2 - 3	86		73
	FQ219052.1	-	2 - 3	88		73
	FQ219074.1	-	2 - 3	82		73
	FQ219577.1	-	2 - 3	82		73
	FQ219728.1	-	2 - 3	82		73
	FQ224655.1	-	2 - 3	82		73
	FQ229884.1	-	2 - 3	121		73
	M00001.1	-	2 - 3	81		73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800000620.rn.1

Additional Information:

This assay is in the 5'UTR region of the BC089820.1,M00001.1,NM_012738.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apoa1

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

regulation of protein phosphorylation
endothelial cell proliferation
negative regulation of cytokine secretion involved in immune response
phospholipid metabolic process
phosphatidylcholine biosynthetic process
cholesterol biosynthetic process
transforming growth factor beta receptor signaling pathway
G-protein coupled receptor signaling pathway
integrin-mediated signaling pathway
response to nutrient
protein localization
cholesterol metabolic process
glucocorticoid metabolic process
negative regulation of tumor necrosis factor-mediated signaling pathway
positive regulation of cholesterol esterification
positive regulation of triglyceride catabolic process
negative regulation of very-low-density lipoprotein particle remodeling
peripheral nervous system axon regeneration
phospholipid transport
protein oxidation
peptidyl-methionine modification
lipid storage
regulation of intestinal cholesterol absorption
cholesterol transport
adrenal gland development
organ regeneration
axon regeneration
regulation of Cdc42 protein signal transduction
cholesterol efflux
phospholipid efflux
negative regulation of heterotypic cell-cell adhesion
very-low-density lipoprotein particle remodeling
high-density lipoprotein particle assembly
positive regulation of Rho protein signal transduction
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
cholesterol homeostasis
blood vessel endothelial cell migration
response to estrogen
reverse cholesterol transport
positive regulation of fatty acid biosynthetic process
phosphatidylcholine metabolic process
negative regulation of interleukin-1 beta secretion
negative regulation of inflammatory response
protein stabilization
negative chemotaxis
positive regulation of lipoprotein lipase activity
vitamin transport
positive regulation of hydrolase activity
negative regulation of hydrolase activity
positive regulation of transferase activity
positive regulation of stress fiber assembly
phospholipid homeostasis
negative regulation of lipase activity
negative regulation of cell adhesion molecule production
negative regulation of response to cytokine stimulus
triglyceride homeostasis
ERK1 and ERK2 cascade
cholesterol import
positive regulation of substrate adhesion-dependent cell spreading

Function(s)

beta-amyloid binding
lipid transporter activity
phospholipid binding
phospholipid transporter activity
high-density lipoprotein particle binding
lipid binding
cholesterol binding
cholesterol transporter activity
enzyme binding
phosphatidylcholine binding
apolipoprotein receptor binding
apolipoprotein A-I receptor binding
identical protein binding
chemorepellent activity
lipase inhibitor activity
phosphatidylcholine-sterol O-acyltransferase activator activity
high-density lipoprotein particle receptor binding
lipoprotein particle binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P411097	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P411097	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P411097	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P411097	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P411097	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10940638	-	-
Affymetrix Rat Gene 1.1 ST Array	10940638	-	-
Rat Genome 230 2.0 Array	1368335_PM_at	-	-
Rat Genome 230 2.0 Array	1368335_at	-	-
Affymetrix HT Rat Focus Array	1368335_PM_at	-	-
Affymetrix HT Rat Focus Array	1368335_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800004019.rn.1	TC0800000620.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800004021.rn.1	TC0800000620.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800004018.rn.1	TC0800000620.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800004020.rn.1	TC0800000620.rn.1	RTA TC
Rat Expression Set 230	1368335_PM_at	-	-
Rat Expression Set 230	1368335_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10940638	-	-
Rat Genome U34 Set	J02597cds_s_at	-	-
Rat Genome U34 Set	M00001_i_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21670711	-	-