Rn00562516_m1 Best Coverage

• Gene Symbol: Foxa1
• Gene Name: forkhead box A1
• Gene Aliases: Hnf3a
• Chromosome Location: Chr.6: 78516579 - 78549669 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Foxa1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012742.1	NP_036874.1	1 - 2	126		65
GenBank mRNA	X55955.1	-	1 - 2	126		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600002519.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Foxa1

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
chromatin remodeling
transcription, DNA-templated
multicellular organism development
regulation of gene expression
negative regulation of epithelial to mesenchymal transition
chromatin modification
dorsal/ventral neural tube patterning
lung development
response to estradiol
positive regulation of intracellular estrogen receptor signaling pathway
tube morphogenesis
hormone metabolic process
glucose homeostasis
positive regulation of neuron differentiation
positive regulation of smoothened signaling pathway
positive regulation of mitotic cell cycle
positive regulation of transcription from RNA polymerase II promoter
anatomical structure formation involved in morphogenesis
neuron fate specification
positive regulation of sequence-specific DNA binding transcription factor activity
regulation of cell cycle
epithelial tube branching involved in lung morphogenesis
lung epithelial cell differentiation
secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development
epithelial-mesenchymal signaling involved in prostate gland development
prostate gland epithelium morphogenesis
prostate gland stromal morphogenesis
epithelial cell maturation involved in prostate gland development
connective tissue development

Function(s)

transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor binding
protein domain specific binding
sequence-specific DNA binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P193083	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P074436	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	238668	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	120706	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	861227	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	588677	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	212832	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	428399	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	920746	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	911123	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	494001	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	614363	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	796362	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	16623	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	123073	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	522842	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	670177	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	647147	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	712393	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	879873	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	49334	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	316236	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	201230	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	682627	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	33582	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	66728	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	68849	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	87084	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P193083	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P074436	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P193083	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P074436	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P074436	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P193083	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P193083	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	36550	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	862	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	101803	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	6856	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	70268	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	89399	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10890105	-	-
Affymetrix Rat Gene 1.0 ST Array	10890104	-	-
Affymetrix Rat Gene 1.0 ST Array	10890103	-	-
Affymetrix Rat Gene 1.1 ST Array	10890102	-	-
Rat Genome 230 2.0 Array	1369834_PM_at	-	-
Rat Genome 230 2.0 Array	1369834_at	-	-
Affymetrix HT Rat Focus Array	1369834_PM_at	-	-
Affymetrix HT Rat Focus Array	1369834_at	-	-
Affymetrix Rat Clariom S Assay	PSR0600017906.rn.1	TC0600002519.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017908.rn.1	TC0600002519.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017907.rn.1	TC0600002519.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017897.rn.1	TC0600002519.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017902.rn.1	TC0600002519.rn.1	RTA TC
Rat Expression Set 230	1369834_at	-	-
Rat Expression Set 230	1369834_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10890102	-	-
Rat Genome U34 Set	X55955_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20716786	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1366646	-	-
RatRef-12 Expression BeadChip	ILMN_49468	-	-