Rn00563194_m1 Best Coverage

• Gene Symbol: Apoc1
• Gene Name: apolipoprotein C-I
• Gene Aliases: ALPCI, Apo-CIB, ApoC-IB, LRRG04
• Chromosome Location: Chr.1: 80606638 - 80609921 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apoc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109996.1	NP_001103466.1	3 - 4	260		85
	NM_012824.2	NP_036956.1	2 - 3	295		85
GenBank mRNA	AY327505.1	-	3 - 4	277		85
	BC098670.1	-	2 - 3	234	7372566	85
	FQ210440.1	-	3 - 4	260		85
	FQ210757.1	-	3 - 4	249		85
	FQ211211.1	-	3 - 4	261		85
	FQ212377.1	-	3 - 4	260		85
	X15512.1	-	2 - 3	295		85

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100004934.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Transporter, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apoc1

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
lipid transport
cholesterol metabolic process
negative regulation of phosphatidylcholine catabolic process
negative regulation of very-low-density lipoprotein particle clearance
regulation of lipid transport
negative regulation of cholesterol transport
cholesterol efflux
phospholipid efflux
plasma lipoprotein particle remodeling
chylomicron remnant clearance
very-low-density lipoprotein particle clearance
lipoprotein metabolic process
negative regulation of fatty acid biosynthetic process
negative regulation of lipid metabolic process
negative regulation of receptor-mediated endocytosis
negative regulation of lipid catabolic process
negative regulation of lipoprotein lipase activity

Function(s)

molecular_function
phospholipase inhibitor activity
fatty acid binding
lipase inhibitor activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P495969	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	776370	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	816337	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	145809	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	98858	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P495969	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P495969	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P495969	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P495969	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700610175	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	31015	-	-
Agilent Rat cDNA Microarray (G4105A)	700610175	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10719526	-	-
Affymetrix Rat Gene 1.0 ST Array	10719529	-	-
Affymetrix Rat Gene 1.0 ST Array	10719525	-	-
Affymetrix Rat Gene 1.0 ST Array	10719528	-	-
Affymetrix Rat Gene 1.0 ST Array	10719527	-	-
Affymetrix Rat Gene 1.1 ST Array	10719524	-	-
Rat Genome 230 2.0 Array	1368587_at	-	-
Rat Genome 230 2.0 Array	1368587_PM_at	-	-
Affymetrix HT Rat Focus Array	1368587_at	-	-
Affymetrix HT Rat Focus Array	1368587_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100039010.rn.1	TC0100004934.rn.1	RTA TC
Rat Expression Set 230	1368587_at	-	-
Rat Expression Set 230	1368587_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10719524	-	-
Rat Genome U34 Set	X15512_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21814611	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371556	-	-
RatRef-12 Expression BeadChip	ILMN_48743	-	-