Rn00563902_m1 Best Coverage

• Gene Symbol: Casp3
• Gene Name: caspase 3
• Gene Aliases: Lice
• Chromosome Location: Chr.16: 48845011 - 48863243 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Casp3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012922.2	NP_037054.1	3 - 4	230		93
	XM_006253130.2	XP_006253192.1	3 - 4	274		93
GenBank mRNA	BC081854.1	-	3 - 4	230	7104685	93
	U34685.1	-	1 - 2	88		93
	U49930.1	-	2 - 3	200		93
	U84410.1	-	2 - 3	204		93

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1600001643.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Apoptosis, Protease, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Casp3

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Process(es)

response to hypoxia
B cell homeostasis
release of cytochrome c from mitochondria
proteolysis
apoptotic process
cellular response to DNA damage stimulus
heart development
sensory perception of sound
learning or memory
extrinsic apoptotic signaling pathway via death domain receptors
intrinsic apoptotic signaling pathway in response to oxidative stress
response to UV
response to wounding
response to glucose
response to organic substance
response to metal ion
response to X-ray
response to organic cyclic compound
protein processing
hippocampus development
neuron differentiation
keratinocyte differentiation
erythrocyte differentiation
negative regulation of B cell proliferation
response to cobalt ion
response to estradiol
response to lipopolysaccharide
glial cell apoptotic process
response to nicotine
intracellular signal transduction
wound healing
response to drug
response to hydrogen peroxide
T cell homeostasis
positive regulation of apoptotic process
negative regulation of apoptotic process
positive regulation of catalytic activity
response to amino acid
positive regulation of neuron apoptotic process
cell fate commitment
negative regulation of cyclin-dependent protein serine/threonine kinase activity
negative regulation of cell cycle
negative regulation of activated T cell proliferation
response to antibiotic
response to glucocorticoid
neuron apoptotic process
cellular response to organic substance
cellular response to organic cyclic compound
extrinsic apoptotic signaling pathway in absence of ligand
execution phase of apoptosis
regulation of apoptotic DNA fragmentation

Function(s)

protease binding
aspartic-type endopeptidase activity
cysteine-type endopeptidase activity
cyclin-dependent protein serine/threonine kinase inhibitor activity
death receptor binding
protein binding
peptidase activity
cysteine-type peptidase activity
phospholipase A2 activator activity
protein complex binding
cysteine-type endopeptidase activity involved in apoptotic process
cysteine-type endopeptidase activity involved in execution phase of apoptosis

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P530813	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	637314	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	68007	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	703641	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	798596	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	834590	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	377080	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	485087	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	884752	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	407044	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583658	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	285593	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	718346	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	274049	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	161059	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	17048	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P530813	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P530813	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P530813	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P496262	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P530813	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	23326	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	100426	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10791656	-	-
Affymetrix Rat Gene 1.0 ST Array	10791658	-	-
Affymetrix Rat Gene 1.0 ST Array	10791654	-	-
Affymetrix Rat Gene 1.0 ST Array	10791653	-	-
Affymetrix Rat Gene 1.0 ST Array	10791657	-	-
Affymetrix Rat Gene 1.0 ST Array	10791659	-	-
Affymetrix Rat Gene 1.0 ST Array	10791655	-	-
Affymetrix Rat Gene 1.1 ST Array	10791652	-	-
Rat Genome 230 2.0 Array	1390386_at	-	-
Rat Genome 230 2.0 Array	1387690_at	-	-
Rat Genome 230 2.0 Array	1387690_PM_at	-	-
Rat Genome 230 2.0 Array	1390386_PM_at	-	-
Affymetrix HT Rat Focus Array	1390386_at	-	-
Affymetrix HT Rat Focus Array	1387690_PM_at	-	-
Affymetrix HT Rat Focus Array	1387690_at	-	-
Affymetrix HT Rat Focus Array	1390386_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1600012246.rn.1	TC1600001643.rn.1	RTA TC
Rat Expression Set 230	1390386_PM_at	-	-
Rat Expression Set 230	1387690_PM_at	-	-
Rat Expression Set 230	1387690_at	-	-
Rat Expression Set 230	1390386_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10791652	-	-
Rat Genome U34 Set	U49930_g_at	-	-
Rat Genome U34 Set	U84410_s_at	-	-
Rat Genome U34 Set	U49930_at	-	-
Rat Genome U34 Set	rc_AI059604_at	-	-
Rat Genome U34 Set	U49930_g_at	-	-
Rat Genome U34 Set	U84410_s_at	-	-
Rat Genome U34 Set	U49930_at	-	-
Rat Genome U34 Set	U84410_s_at	-	-
Rat Genome U34 Set	U49930_g_at	-	-
Rat Genome U34 Set	U49930_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22257881	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1349218	-	-
RatRef-12 Expression BeadChip	ILMN_50498	-	-