Rn00564052_m1 Best Coverage

• Gene Symbol: Ctsh
• Gene Name: cathepsin H
• Gene Aliases: -
• Chromosome Location: Chr.8: 97439153 - 97458293 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ctsh
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012939.1	NP_037071.1	7 - 8	546		83
	XM_008766440.1	XP_008764662.1	7 - 8	597		83
GenBank mRNA	BC085352.1	-	7 - 8	561	7115929	83
	FQ210730.1	-	7 - 8	556		83
	FQ213183.1	-	7 - 8	556		83
	FQ219177.1	-	7 - 8			83
	FQ219285.1	-	7 - 8	556		83
	FQ219548.1	-	7 - 8	556		83
	FQ219611.1	-	7 - 8	574		83
	FQ220588.1	-	4 - 5	325		83
	FQ223707.1	-	7 - 8	552		83
	FQ228686.1	-	7 - 8	616		83
	FQ228906.1	-	7 - 8	563		83
	FQ228938.1	-	7 - 8	553		83
	M38135.1	-	7 - 8	540		83
	Y00708.1	-	7 - 8	546		83

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800001277.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Protease, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ctsh

Panther Classification:

Molecular Function -

cysteine protease

Gene Ontology Categories:

Process(es)

metanephros development
T cell mediated cytotoxicity
adaptive immune response
immune response-regulating signaling pathway
proteolysis
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
spermatogenesis
positive regulation of cell proliferation
positive regulation of gene expression
positive regulation of epithelial cell migration
neuropeptide catabolic process
bradykinin catabolic process
positive regulation of peptidase activity
positive regulation of cell migration
zymogen activation
protein destabilization
response to retinoic acid
membrane protein proteolysis
negative regulation of apoptotic process
surfactant homeostasis
positive regulation of angiogenesis
dichotomous subdivision of terminal units involved in lung branching
ERK1 and ERK2 cascade
cellular response to thyroid hormone stimulus
positive regulation of apoptotic signaling pathway

Function(s)

endopeptidase activity
aminopeptidase activity
cysteine-type endopeptidase activity
serine-type endopeptidase activity
peptidase activity
cysteine-type peptidase activity
cysteine-type endopeptidase activator activity involved in apoptotic process
peptidase activator activity involved in apoptotic process
HLA-A specific activating MHC class I receptor activity
kininogen binding
protein complex binding
protein self-association
thyroid hormone binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P552849	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	560802	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	559204	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	463899	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	395868	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	756403	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	755875	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583177	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	458763	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	598076	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	666014	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	145187	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	277671	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	316738	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	44605	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	103844	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	138159	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P552849	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P552849	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P552849	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P552849	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700783730	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702147645	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	97105	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	80885	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	11018	-	-
Agilent Rat cDNA Microarray (G4105A)	700783730	-	-
Agilent Rat cDNA Microarray (G4105A)	702147645	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10912172	-	-
Affymetrix Rat Gene 1.0 ST Array	10912164	-	-
Affymetrix Rat Gene 1.0 ST Array	10912166	-	-
Affymetrix Rat Gene 1.0 ST Array	10912170	-	-
Affymetrix Rat Gene 1.0 ST Array	10912165	-	-
Affymetrix Rat Gene 1.0 ST Array	10912167	-	-
Affymetrix Rat Gene 1.0 ST Array	10912171	-	-
Affymetrix Rat Gene 1.0 ST Array	10912168	-	-
Affymetrix Rat Gene 1.0 ST Array	10912173	-	-
Affymetrix Rat Gene 1.0 ST Array	10912162	-	-
Affymetrix Rat Gene 1.0 ST Array	10912169	-	-
Affymetrix Rat Gene 1.0 ST Array	10912163	-	-
Affymetrix Rat Gene 1.1 ST Array	10912161	-	-
Rat Genome 230 2.0 Array	1386899_at	-	-
Rat Genome 230 2.0 Array	1386899_PM_at	-	-
Affymetrix HT Rat Focus Array	1386899_PM_at	-	-
Affymetrix HT Rat Focus Array	1386899_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800009316.rn.1	TC0800001277.rn.1	RTA TC
Rat Expression Set 230	1386899_PM_at	-	-
Rat Expression Set 230	1386899_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10912161	-	-
Rat Genome U34 Set	M38135_at	-	-
Rat Genome U34 Set	rc_AI009415_f_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21861231	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1367864	-	-
RatRef-12 Expression BeadChip	ILMN_59666	-	-