Rn00569909_m1 Best Coverage

• Gene Symbol: Sox10
• Gene Name: SRY (sex determining region Y)-box 10
• Gene Aliases: -
• Chromosome Location: Chr.7: 120393254 - 120403523 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox10
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019193.2	NP_062066.1	4 - 5	1280		114
GenBank mRNA	AJ001029.1	-	4 - 5	1281		114
	BC062067.1	-	3 - 4	992	5599259	114

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700003488.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sox10

Gene Ontology Categories:

Process(es)

in utero embryonic development
neural crest cell migration
positive regulation of neuroblast proliferation
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
peripheral nervous system development
positive regulation of gliogenesis
cell differentiation
melanocyte differentiation
lacrimal gland development
negative regulation of apoptotic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
cell development
cell maturation
enteric nervous system development
digestive tract morphogenesis
developmental growth
oligodendrocyte differentiation
stem cell differentiation
morphogenesis of a branching epithelium
negative regulation of canonical Wnt signaling pathway

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription factor binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein binding
transcription factor binding
identical protein binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P447394	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	491761	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	589233	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	12805	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	44669	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	964872	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	765848	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	234200	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	270220	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	470503	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	58250	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P447394	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P447394	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P447394	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P447394	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701744690	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	31284	-	-
Agilent Rat cDNA Microarray (G4105A)	701744690	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10905383	-	-
Affymetrix Rat Gene 1.0 ST Array	10905379	-	-
Affymetrix Rat Gene 1.0 ST Array	10905380	-	-
Affymetrix Rat Gene 1.0 ST Array	10905381	-	-
Affymetrix Rat Gene 1.0 ST Array	10905382	-	-
Affymetrix Rat Gene 1.1 ST Array	10905378	-	-
Rat Genome 230 2.0 Array	1391699_PM_at	-	-
Rat Genome 230 2.0 Array	1368439_PM_at	-	-
Rat Genome 230 2.0 Array	1391699_at	-	-
Rat Genome 230 2.0 Array	1368439_at	-	-
Affymetrix HT Rat Focus Array	1368439_at	-	-
Affymetrix HT Rat Focus Array	1368439_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700027376.rn.1	TC0700003488.rn.1	RTA TC
Rat Expression Set 230	1368439_PM_at	-	-
Rat Expression Set 230	1368439_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10905378	-	-
Rat Genome U34 Set	AJ001029_at	-	-
Rat Genome U34 Set	AJ001029_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21723800	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1366090	-	-
RatRef-12 Expression BeadChip	ILMN_53973	-	-