Smad4
Genomic Map
Back To TopAssay Details
| Gene Symbol: Smad4 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_019275.2 | NP_062148.1 | 3 - 4 | 514 | 101 | |
| GenBank mRNA | AB010954.1 | - | 3 - 4 | 514 | 101 | |
| AF056002.1 | - | 586 | 101 | |||
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1800001682.rn.1Set Membership: |
Ambion siRNA available
Amplicon length greater than or equal to 101
Recommended Assay
Rattus norvegicus
Rat Tumor Metastasis Panel
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
branching involved in ureteric bud morphogenesis
response to hypoxia
in utero embryonic development
gastrulation with mouth forming second
kidney development
atrioventricular valve formation
epithelial to mesenchymal transition involved in endocardial cushion formation
positive regulation of cell proliferation involved in heart valve morphogenesis
cardiac septum development
brainstem development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
transforming growth factor beta receptor signaling pathway
SMAD protein complex assembly
gastrulation
axon guidance
endoderm development
mesoderm development
cell proliferation
negative regulation of cell proliferation
anterior/posterior pattern specification
positive regulation of epithelial to mesenchymal transition
positive regulation of pathway-restricted SMAD protein phosphorylation
neural crest cell differentiation
regulation of transforming growth factor beta receptor signaling pathway
negative regulation of cell growth
BMP signaling pathway
positive regulation of transforming growth factor beta receptor signaling pathway
positive regulation of BMP signaling pathway
somite rostral/caudal axis specification
regulation of transforming growth factor beta2 production
intracellular signal transduction
atrioventricular canal development
endothelial cell activation
regulation of cell proliferation
negative regulation of protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
developmental growth
neuron fate commitment
tissue morphogenesis
sebaceous gland development
formation of anatomical boundary
regulation of binding
regulation of hair follicle development
palate development
positive regulation of SMAD protein import into nucleus
SMAD protein signal transduction
negative regulation of cell death
endocardial cell differentiation
response to transforming growth factor beta
metanephric mesenchyme morphogenesis
nephrogenic mesenchyme morphogenesis
RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II transcription factor binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
protein binding
collagen binding
transforming growth factor beta receptor, common-partner cytoplasmic mediator activity
filamin binding
identical protein binding
protein homodimerization activity
sequence-specific DNA binding
transcription regulatory region DNA binding
SMAD binding
metal ion binding
protein heterodimerization activity
I-SMAD binding
R-SMAD binding
branching involved in ureteric bud morphogenesis
response to hypoxia
in utero embryonic development
gastrulation with mouth forming second
kidney development
atrioventricular valve formation
epithelial to mesenchymal transition involved in endocardial cushion formation
positive regulation of cell proliferation involved in heart valve morphogenesis
cardiac septum development
brainstem development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
transforming growth factor beta receptor signaling pathway
SMAD protein complex assembly
gastrulation
axon guidance
endoderm development
mesoderm development
cell proliferation
negative regulation of cell proliferation
anterior/posterior pattern specification
positive regulation of epithelial to mesenchymal transition
positive regulation of pathway-restricted SMAD protein phosphorylation
neural crest cell differentiation
regulation of transforming growth factor beta receptor signaling pathway
negative regulation of cell growth
BMP signaling pathway
positive regulation of transforming growth factor beta receptor signaling pathway
positive regulation of BMP signaling pathway
somite rostral/caudal axis specification
regulation of transforming growth factor beta2 production
intracellular signal transduction
atrioventricular canal development
endothelial cell activation
regulation of cell proliferation
negative regulation of protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
developmental growth
neuron fate commitment
tissue morphogenesis
sebaceous gland development
formation of anatomical boundary
regulation of binding
regulation of hair follicle development
palate development
positive regulation of SMAD protein import into nucleus
SMAD protein signal transduction
negative regulation of cell death
endocardial cell differentiation
response to transforming growth factor beta
metanephric mesenchyme morphogenesis
nephrogenic mesenchyme morphogenesis
RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II transcription factor binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
protein binding
collagen binding
transforming growth factor beta receptor, common-partner cytoplasmic mediator activity
filamin binding
identical protein binding
protein homodimerization activity
sequence-specific DNA binding
transcription regulatory region DNA binding
SMAD binding
metal ion binding
protein heterodimerization activity
I-SMAD binding
R-SMAD binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P068143 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 49648 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 523090 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 853271 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 335989 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 307947 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 755368 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 422037 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 240361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 268369 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 35707 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 754056 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 283473 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 595212 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 449181 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 334455 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 834269 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 10382 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 38753 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 84331 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 310809 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 94527 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 4573 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 66944 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P068143 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P068143 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P068143 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P228715 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700520714 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 102776 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 96104 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 77732 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 702138046 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700520714 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10805172 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805176 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805178 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805166 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805168 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805173 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805179 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805170 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805171 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805167 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805177 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805180 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805174 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805175 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10805165 | - | - |
| Rat Genome 230 2.0 Array | 1386984_at | - | - |
| Rat Genome 230 2.0 Array | 1367910_at | - | - |
| Rat Genome 230 2.0 Array | 1386984_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1367910_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1386984_at | - | - |
| Affymetrix HT Rat Focus Array | 1367910_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1367910_at | - | - |
| Affymetrix HT Rat Focus Array | 1386984_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1800011802.rn.1 | TC1800001682.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1800011801.rn.1 | TC1800001682.rn.1 | RTA TC |
| Rat Expression Set 230 | 1367910_PM_at | - | - |
| Rat Expression Set 230 | 1367910_at | - | - |
| Rat Expression Set 230 | 1386984_PM_at | - | - |
| Rat Expression Set 230 | 1386984_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10805165 | - | - |
| Rat Genome U34 Set | rc_AI008639_at | - | - |
| Rat Genome U34 Set | rc_AI235646_at | - | - |
| Rat Genome U34 Set | rc_AI008639_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21686560 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1354280 | - | - |
| RatRef-12 Expression BeadChip | ILMN_49309 | - | - |
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