Rn00572130_m1 Best Coverage

• Gene Symbol: Ntrk1
• Gene Name: neurotrophic tyrosine kinase, receptor, type 1
• Gene Aliases: Trk
• Chromosome Location: Chr.2: 187143562 - 187160373 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ntrk1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_021589.1	NP_067600.1	6 - 7	783		65
	XM_006232746.2	XP_006232808.1	6 - 7	774		65
GenBank mRNA	M85214.1	-	6 - 7	783		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200004013.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Protein Kinase, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ntrk1

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Process(es)

protein phosphorylation
nervous system development
axon guidance
aging
learning or memory
circadian rhythm
negative regulation of cell proliferation
response to radiation
programmed cell death involved in cell development
positive regulation of neuron projection development
response to activity
peptidyl-tyrosine phosphorylation
sensory perception of pain
olfactory nerve development
B cell differentiation
response to nutrient levels
response to nicotine
nerve growth factor signaling pathway
mechanoreceptor differentiation
response to drug
positive regulation of programmed cell death
negative regulation of neuron apoptotic process
response to ethanol
positive regulation of angiogenesis
positive regulation of Ras protein signal transduction
protein autophosphorylation
neurotrophin TRK receptor signaling pathway
sympathetic nervous system development
response to axon injury
detection of temperature stimulus involved in sensory perception of pain
detection of mechanical stimulus involved in sensory perception of pain
positive regulation of NF-kappaB transcription factor activity
response to hydrostatic pressure
response to electrical stimulus
positive regulation of synaptic transmission, glutamatergic
Sertoli cell development
axonogenesis involved in innervation
positive regulation of ERK1 and ERK2 cascade
cellular response to nicotine
cellular response to growth factor stimulus
negative regulation of neuron death
cellular response to nerve growth factor stimulus

Function(s)

protein tyrosine kinase activity
transmembrane receptor protein tyrosine kinase activity
neurotrophin p75 receptor binding
protein binding
ATP binding
nerve growth factor receptor activity
kinase binding
protein homodimerization activity
ephrin receptor binding
nerve growth factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P115417	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P430547	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	528954	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	389881	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	704500	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	399012	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	427412	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	410632	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	238507	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	81578	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	494881	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	166790	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	936776	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	468738	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	465529	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	732153	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	907628	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	127605	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	117656	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P115417	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P430547	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P430547	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P115417	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P115417	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P430547	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P780039	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P430547	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	50885	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	6435	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10824203	-	-
Affymetrix Rat Gene 1.0 ST Array	10824198	-	-
Affymetrix Rat Gene 1.0 ST Array	10824201	-	-
Affymetrix Rat Gene 1.0 ST Array	10824206	-	-
Affymetrix Rat Gene 1.0 ST Array	10824196	-	-
Affymetrix Rat Gene 1.0 ST Array	10824192	-	-
Affymetrix Rat Gene 1.0 ST Array	10824199	-	-
Affymetrix Rat Gene 1.0 ST Array	10824190	-	-
Affymetrix Rat Gene 1.0 ST Array	10824204	-	-
Affymetrix Rat Gene 1.0 ST Array	10824195	-	-
Affymetrix Rat Gene 1.0 ST Array	10824197	-	-
Affymetrix Rat Gene 1.0 ST Array	10824202	-	-
Affymetrix Rat Gene 1.0 ST Array	10824189	-	-
Affymetrix Rat Gene 1.0 ST Array	10824193	-	-
Affymetrix Rat Gene 1.0 ST Array	10824194	-	-
Affymetrix Rat Gene 1.0 ST Array	10824200	-	-
Affymetrix Rat Gene 1.0 ST Array	10824205	-	-
Affymetrix Rat Gene 1.0 ST Array	10824191	-	-
Affymetrix Rat Gene 1.1 ST Array	10824188	-	-
Rat Genome 230 2.0 Array	1369000_PM_at	-	-
Rat Genome 230 2.0 Array	1375615_PM_at	-	-
Rat Genome 230 2.0 Array	1369000_at	-	-
Rat Genome 230 2.0 Array	1375615_at	-	-
Affymetrix HT Rat Focus Array	1375615_PM_at	-	-
Affymetrix HT Rat Focus Array	1375615_at	-	-
Affymetrix HT Rat Focus Array	1369000_PM_at	-	-
Affymetrix HT Rat Focus Array	1369000_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200027043.rn.1	TC0200004013.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200027044.rn.1	TC0200004013.rn.1	RTA TC
Rat Expression Set 230	1375615_at	-	-
Rat Expression Set 230	1369000_at	-	-
Rat Expression Set 230	1375615_PM_at	-	-
Rat Expression Set 230	1369000_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10824188	-	-
Rat Genome U34 Set	M85214_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22103001	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1370831	-	-
RatRef-12 Expression BeadChip	ILMN_58089	-	-