Rn00572154_m1 Best Coverage

• Gene Symbol: Slc9a3r1
• Gene Name: solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
• Gene Aliases: -
• Chromosome Location: Chr.10: 103713045 - 103730145 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Slc9a3r1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_021594.1	NP_067605.1	1 - 2	508		93
GenBank mRNA	AF154336.1	-	1 - 2	508		93
	FQ213792.1	-	1 - 2	625		93
	FQ228926.1	-	1 - 2	606		93

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000001917.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Recommended Assay, Rattus norvegicus, Rat Wnt Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Slc9a3r1

Gene Ontology Categories:

Process(es)

renal sodium ion transport
adenylate cyclase-activating dopamine receptor signaling pathway
sensory perception of sound
negative regulation of cell proliferation
negative regulation of platelet-derived growth factor receptor signaling pathway
negative regulation of sodium ion transport
negative regulation of phosphatidylinositol 3-kinase signaling
Wnt signaling pathway
cAMP-mediated signaling
microvillus assembly
actin cytoskeleton organization
negative regulation of cell migration
cellular phosphate ion homeostasis
negative regulation of sodium:proton antiporter activity
bile acid secretion
cellular protein localization
glutathione transport
regulation of excretion
regulation of protein kinase activity
negative regulation of protein kinase B signaling
auditory receptor cell stereocilium organization
phospholipase C-activating dopamine receptor signaling pathway
renal absorption
negative regulation of ERK1 and ERK2 cascade
renal phosphate ion absorption
negative regulation of cell motility
positive regulation of intrinsic apoptotic signaling pathway

Function(s)

receptor binding
protein binding
beta-catenin binding
chloride channel regulator activity
phosphatase binding
protein domain specific binding
PDZ domain binding
beta-2 adrenergic receptor binding
protein complex binding
protein complex scaffold
protein self-association
dopamine receptor binding
growth factor receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P136603	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	823680	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	563801	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	642178	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	672906	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	733817	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	385039	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	850954	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	97763	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	45121	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	199527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	712739	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	52885	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	97977	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P136603	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P136603	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P136603	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P136603	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700501829	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700330190	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	23259	-	-
Agilent Rat cDNA Microarray (G4105A)	700330190	-	-
Agilent Rat cDNA Microarray (G4105A)	700501829	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10739496	-	-
Affymetrix Rat Gene 1.0 ST Array	10739493	-	-
Affymetrix Rat Gene 1.0 ST Array	10739494	-	-
Affymetrix Rat Gene 1.0 ST Array	10739491	-	-
Affymetrix Rat Gene 1.0 ST Array	10739495	-	-
Affymetrix Rat Gene 1.0 ST Array	10739492	-	-
Affymetrix Rat Gene 1.1 ST Array	10739490	-	-
Rat Genome 230 2.0 Array	1370032_at	-	-
Rat Genome 230 2.0 Array	1387793_at	-	-
Rat Genome 230 2.0 Array	1370032_PM_at	-	-
Rat Genome 230 2.0 Array	1387793_PM_at	-	-
Affymetrix HT Rat Focus Array	1387793_PM_at	-	-
Affymetrix HT Rat Focus Array	1370032_PM_at	-	-
Affymetrix HT Rat Focus Array	1387793_at	-	-
Affymetrix HT Rat Focus Array	1370032_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000017222.rn.1	TC1000001917.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000017221.rn.1	TC1000001917.rn.1	RTA TC
Rat Expression Set 230	1370032_PM_at	-	-
Rat Expression Set 230	1370032_at	-	-
Rat Expression Set 230	1387793_PM_at	-	-
Rat Expression Set 230	1387793_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10739490	-	-
Rat Genome U34 Set	rc_AI007803_at	-	-
Rat Genome U34 Set	rc_AI233724_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21561968	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1364745	-	-
RatRef-12 Expression BeadChip	ILMN_51318	-	-