Rn00573522_s1 Best Coverage

• Gene Symbol: Cxcr4
• Gene Name: chemokine (C-X-C motif) receptor 4
• Gene Aliases: -
• Chromosome Location: Chr.13: 45314952 - 45318856 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cxcr4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022205.3	NP_071541.2	2	1067		58
GenBank mRNA	AF452185.1	-	1	992		58
	BC089804.1	-	2	1047		58
	U54791.1	-	3	984		58
	U90610.1	-	1	992		58

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1300001352.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Rat Chemokine Panel, Rat Tumor Metastasis Panel, 1700, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cxcr4

Gene Ontology Categories:

Process(es)

branching involved in blood vessel morphogenesis
response to hypoxia
ameboidal-type cell migration
neuron migration
epithelial cell development
chemotaxis
G protein-coupled receptor signaling pathway
germ cell development
brain development
neuron recognition
motor neuron axon guidance
germ cell migration
cell migration
calcium-mediated signaling
telencephalon cell migration
regulation of cell migration
T cell proliferation
neutrophil activation
regulation of programmed cell death
myelin maintenance
positive regulation of oligodendrocyte differentiation
regulation of chemotaxis
regulation of calcium ion transport
cardiac muscle contraction
neural precursor cell proliferation
chemokine-mediated signaling pathway
cellular response to cytokine stimulus

Function(s)

actin binding
C-C chemokine receptor activity
C-X-C chemokine receptor activity
cytokine binding
ubiquitin protein ligase binding
myosin light chain binding
ubiquitin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P425580	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	121875	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	842839	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	390069	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	79176	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P425580	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P425580	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P425580	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12159	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P425580	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	63944	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10767376	-	-
Affymetrix Rat Gene 1.0 ST Array	10767375	-	-
Affymetrix Rat Gene 1.0 ST Array	10767379	-	-
Affymetrix Rat Gene 1.0 ST Array	10767374	-	-
Affymetrix Rat Gene 1.0 ST Array	10767378	-	-
Affymetrix Rat Gene 1.0 ST Array	10767377	-	-
Affymetrix Rat Gene 1.1 ST Array	10767373	-	-
Rat Genome 230 2.0 Array	1370097_PM_a_at	-	-
Rat Genome 230 2.0 Array	1389244_PM_x_at	-	-
Rat Genome 230 2.0 Array	1373661_PM_a_at	-	-
Rat Genome 230 2.0 Array	1389244_x_at	-	-
Rat Genome 230 2.0 Array	1373661_a_at	-	-
Rat Genome 230 2.0 Array	1370097_a_at	-	-
Affymetrix HT Rat Focus Array	1370097_a_at	-	-
Affymetrix HT Rat Focus Array	1389244_PM_x_at	-	-
Affymetrix HT Rat Focus Array	1373661_a_at	-	-
Affymetrix HT Rat Focus Array	1373661_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1389244_x_at	-	-
Affymetrix HT Rat Focus Array	1370097_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR1300008878.rn.1	TC1300001352.rn.1	RTA TC
Rat Expression Set 230	1373661_PM_a_at	-	-
Rat Expression Set 230	1389244_x_at	-	-
Rat Expression Set 230	1370097_PM_a_at	-	-
Rat Expression Set 230	1389244_PM_x_at	-	-
Rat Expression Set 230	1370097_a_at	-	-
Rat Expression Set 230	1373661_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10767373	-	-
Rat Genome U34 Set	U90610_at	-	-
Rat Genome U34 Set	rc_AA945737_at	-	-
Rat Genome U34 Set	U90610_g_at	-	-
Rat Genome U34 Set	U90610_g_at	-	-
Rat Genome U34 Set	U90610_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21371521	-	-
ABI Rat Genome Survey Microarray	22116594	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1649910	-	-
RatRef-12 Expression BeadChip	ILMN_51417	-	-