Rn00574125_g1

• Gene Symbol: Aif1
• Gene Name: allograft inflammatory factor 1
• Gene Aliases: BART-1, Bart1, iba1, mrf-1
• Chromosome Location: Chr.20: 5161350 - 5167180 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Aif1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_017196.3	NP_058892.1	5 - 6	451		126
	XM_006256061.2	XP_006256123.1	4 - 5	825		126
	XM_006256062.2	XP_006256124.1	5 - 6	802		126
	XM_006256063.2	XP_006256125.1	5 - 6	765		126
	XM_006256065.2	XP_006256127.1	7 - 8	601		126
GenBank mRNA	AB000818.1	-	5 - 6	449		126
	BC081822.1	-	3 - 4	1298		126
	D82069.1	-	7 - 8	606		126
	FM053942.1	-	5 - 6	438		126
	FQ231499.1	-	5 - 6	449		126
	U17919.1	-	5 - 6	423		126
	U33471.1	-	3 - 4	1475		125

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001109.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Aif1

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Process(es)

positive regulation of protein phosphorylation
phagocytosis, engulfment
inflammatory response
negative regulation of gene expression
positive regulation of muscle hyperplasia
Rac protein signal transduction
actin filament polymerization
positive regulation of cell migration
cellular response to extracellular stimulus
cellular response to hormone stimulus
response to cytokine
positive regulation of T cell proliferation
macrophage activation
negative regulation of apoptotic process
positive regulation of nitric oxide biosynthetic process
positive regulation of smooth muscle cell proliferation
negative regulation of smooth muscle cell proliferation
response to axon injury
actin filament bundle assembly
response to glucocorticoid
response to electrical stimulus
cellular response to morphine
cellular response to interferon-gamma
cellular response to hydroperoxide
negative regulation of smooth muscle cell chemotaxis
positive regulation of smooth muscle cell chemotaxis
positive regulation of monocyte chemotaxis
ruffle assembly
positive regulation of G1/S transition of mitotic cell cycle
positive regulation of T cell migration

Function(s)

calcium ion binding
actin filament binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P047714	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P130983	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130983	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P047714	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P047714	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130983	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P047714	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P130983	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P421534	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700546891	-	-
Agilent Rat cDNA Microarray (G4105A)	700546891	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10828042	-	-
Affymetrix Rat Gene 1.0 ST Array	10828036	-	-
Affymetrix Rat Gene 1.0 ST Array	10828041	-	-
Affymetrix Rat Gene 1.0 ST Array	10828035	-	-
Affymetrix Rat Gene 1.0 ST Array	10828039	-	-
Affymetrix Rat Gene 1.0 ST Array	10828038	-	-
Affymetrix Rat Gene 1.0 ST Array	10828044	-	-
Affymetrix Rat Gene 1.0 ST Array	10828043	-	-
Affymetrix Rat Gene 1.0 ST Array	10828033	-	-
Affymetrix Rat Gene 1.0 ST Array	10828045	-	-
Affymetrix Rat Gene 1.0 ST Array	10828037	-	-
Affymetrix Rat Gene 1.0 ST Array	10828034	-	-
Affymetrix Rat Gene 1.0 ST Array	10828040	-	-
Affymetrix Rat Gene 1.1 ST Array	10828032	-	-
Rat Genome 230 2.0 Array	1369489_PM_at	-	-
Rat Genome 230 2.0 Array	1369489_at	-	-
Rat Genome 230 2.0 Array	1368558_PM_s_at	-	-
Rat Genome 230 2.0 Array	1368558_s_at	-	-
Affymetrix HT Rat Focus Array	1369489_at	-	-
Affymetrix HT Rat Focus Array	1368558_s_at	-	-
Affymetrix HT Rat Focus Array	1368558_PM_s_at	-	-
Affymetrix HT Rat Focus Array	1369489_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000009339.rn.1	TC2000001109.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009338.rn.1	TC2000001109.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009332.rn.1	TC2000001109.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009343.rn.1	TC2000001109.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009334.rn.1	TC2000001109.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009333.rn.1	TC2000001109.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009336.rn.1	TC2000001109.rn.1	RTA TC
Rat Expression Set 230	1369489_PM_at	-	-
Rat Expression Set 230	1368558_s_at	-	-
Rat Expression Set 230	1368558_PM_s_at	-	-
Rat Expression Set 230	1369489_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10828032	-	-
Rat Genome U34 Set	U17919_s_at	-	-
Rat Genome U34 Set	U10894_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21312781	-	-
ABI Rat Genome Survey Microarray	21565898	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359219	-	-
RatRef-12 Expression BeadChip	ILMN_47707	-	-