Rn00574354_m1 Best Coverage

• Gene Symbol: Pafah1b2
• Gene Name: platelet-activating factor acetylhydrolase 1b, catalytic subunit 2
• Gene Aliases: -
• Chromosome Location: Chr.8: 50256969 - 50310044 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pafah1b2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022387.3	NP_071782.1	5 - 6	536		103
	XM_006242957.2	XP_006243019.1	5 - 6	1002		103
	XM_006242958.2	XP_006243020.1	5 - 6	535		103
	XM_008766172.1	XP_008764394.1	5 - 6	766		103
GenBank mRNA	AF016048.1	-	5 - 6	499		103
	BC081714.1	-	5 - 6	536		103

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800002452.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pafah1b2

Gene Ontology Categories:

Process(es)

spermatogenesis
brain development
lipid catabolic process
positive regulation of macroautophagy

Function(s)

1-alkyl-2-acetylglycerophosphocholine esterase activity
protein binding
protein homodimerization activity
protein heterodimerization activity
platelet-activating factor acetyltransferase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P209459	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	139258	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	442973	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	301824	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	827074	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	272672	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	247371	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	769943	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	295118	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	10261	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	33706	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	798972	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	429502	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	779288	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	438686	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	208286	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	6255	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	64984	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	75865	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P209459	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P209459	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P209459	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P209459	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12216	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700768754	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	66570	-	-
Agilent Rat cDNA Microarray (G4105A)	700768754	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10917075	-	-
Affymetrix Rat Gene 1.0 ST Array	10917074	-	-
Affymetrix Rat Gene 1.0 ST Array	10917073	-	-
Affymetrix Rat Gene 1.0 ST Array	10917070	-	-
Affymetrix Rat Gene 1.0 ST Array	10917071	-	-
Affymetrix Rat Gene 1.0 ST Array	10917072	-	-
Affymetrix Rat Gene 1.1 ST Array	10917069	-	-
Rat Genome 230 2.0 Array	1369641_PM_at	-	-
Rat Genome 230 2.0 Array	1369642_PM_at	-	-
Rat Genome 230 2.0 Array	1369642_at	-	-
Rat Genome 230 2.0 Array	1369641_at	-	-
Affymetrix HT Rat Focus Array	1369642_PM_at	-	-
Affymetrix HT Rat Focus Array	1369642_at	-	-
Affymetrix HT Rat Focus Array	1369641_PM_at	-	-
Affymetrix HT Rat Focus Array	1369641_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800019763.rn.1	TC0800002452.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019759.rn.1	TC0800002452.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019760.rn.1	TC0800002452.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019762.rn.1	TC0800002452.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800019761.rn.1	TC0800002452.rn.1	RTA TC
Rat Expression Set 230	1369641_at	-	-
Rat Expression Set 230	1369642_PM_at	-	-
Rat Expression Set 230	1369641_PM_at	-	-
Rat Expression Set 230	1369642_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10917069	-	-
Rat Genome U34 Set	rc_AA899935_at	-	-
Rat Genome U34 Set	rc_AA998172_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21126056	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358552	-	-
RatRef-12 Expression BeadChip	ILMN_65657	-	-