Rn00574451_m1 Best Coverage

• Gene Symbol: Calr
• Gene Name: calreticulin
• Gene Aliases: -
• Chromosome Location: Chr.19: 25956771 - 25961666 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Calr
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022399.2	NP_071794.1	7 - 8	1028		91
GenBank mRNA	BC062395.1	-	7 - 8	1005	5623178	91
	D78308.1	-	7 - 8	980		91
	FQ210587.1	-		1033		91
	FQ226996.1	-	1 - 2	113		91
	X13702.1	-	1 - 2	161		91
	X53363.1	-	7 - 8	1000		91
	X79327.1	-	7 - 8	978		91

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900001210.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Rat Androgen Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Calr

Panther Classification:

Molecular Function -

chaperone

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
peptide antigen assembly with MHC class I protein complex
protein folding
protein export from nucleus
cell cycle arrest
spermatogenesis
positive regulation of cell proliferation
response to organic substance
positive regulation of gene expression
negative regulation of translation
cortical actin cytoskeleton organization
response to estradiol
negative regulation of intracellular steroid hormone receptor signaling pathway
response to testosterone
protein localization to nucleus
regulation of meiotic nuclear division
response to drug
negative regulation of neuron differentiation
positive regulation of DNA replication
positive regulation of cell cycle
negative regulation of transcription, DNA-templated
negative regulation of retinoic acid receptor signaling pathway
positive regulation of phagocytosis
protein stabilization
cardiac muscle cell differentiation
chaperone-mediated protein folding
cellular response to lithium ion
cellular response to organic substance
cellular senescence
positive regulation of substrate adhesion-dependent cell spreading
positive regulation of dendritic cell chemotaxis

Function(s)

glycoprotein binding
mRNA binding
integrin binding
iron ion binding
calcium ion binding
protein binding
carbohydrate binding
ubiquitin protein ligase binding
peptide binding
hormone binding
poly(A) RNA binding
androgen receptor binding
unfolded protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P300506	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	779003	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	493079	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	964119	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	668946	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	20170	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P300506	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P300506	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P300506	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P300506	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10806646	-	-
Affymetrix Rat Gene 1.0 ST Array	10806641	-	-
Affymetrix Rat Gene 1.0 ST Array	10806643	-	-
Affymetrix Rat Gene 1.0 ST Array	10806645	-	-
Affymetrix Rat Gene 1.0 ST Array	10806644	-	-
Affymetrix Rat Gene 1.0 ST Array	10806649	-	-
Affymetrix Rat Gene 1.0 ST Array	10806648	-	-
Affymetrix Rat Gene 1.0 ST Array	10806647	-	-
Affymetrix Rat Gene 1.0 ST Array	10806642	-	-
Affymetrix Rat Gene 1.1 ST Array	10806640	-	-
Rat Genome 230 2.0 Array	1398750_at	-	-
Rat Genome 230 2.0 Array	1398750_PM_at	-	-
Affymetrix HT Rat Focus Array	1398750_PM_at	-	-
Affymetrix HT Rat Focus Array	1398750_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900009828.rn.1	TC1900001210.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900009830.rn.1	TC1900001210.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900009829.rn.1	TC1900001210.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900009831.rn.1	TC1900001210.rn.1	RTA TC
Rat Expression Set 230	1398750_at	-	-
Rat Expression Set 230	1398750_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10806640	-	-
Rat Genome U34 Set	D78308_g_at	-	-
Rat Genome U34 Set	D78308_at	-	-
Rat Genome U34 Set	X53363cds_s_at	-	-
Rat Genome U34 Set	rc_AI030409_f_at	-	-
Rat Genome U34 Set	X53363cds_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22348003	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1368515	-	-
RatRef-12 Expression BeadChip	ILMN_67911	-	-