Rn00575255_m1 Best Coverage

• Gene Symbol: Bbox1
• Gene Name: butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
• Gene Aliases: Bbh, Bbox
• Chromosome Location: Chr.3: 101427052 - 101465995 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Bbox1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022629.1	NP_072151.1	6 - 7	1002		93
GenBank mRNA	AF160958.1	-	6 - 7	1002		93
	FQ210746.1	-		1094		93

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300003844.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Bbox1

Panther Classification:

Molecular Function -

hydroxylase

Gene Ontology Categories:

Process(es)

carnitine biosynthetic process
oxidation-reduction process

Function(s)

iron ion binding
zinc ion binding
gamma-butyrobetaine dioxygenase activity
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P12270	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	23449	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	731340	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	642112	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	298228	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	7790	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	765465	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	684402	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	278651	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	524343	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	95600	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	833444	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	798797	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	92984	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	473839	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	307016	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	255139	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	427052	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	726604	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	584634	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	773510	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	199694	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	110405	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	823323	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	261361	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	705292	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	878280	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	225898	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	484676	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	6863	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	165040	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	175359	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	412746	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	567504	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	77696	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	92781	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	126333	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	114635	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	72884	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	46884	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	137486	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	40261	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12270	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12270	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P12270	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12270	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	54845	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	93561	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10848034	-	-
Affymetrix Rat Gene 1.0 ST Array	10848036	-	-
Affymetrix Rat Gene 1.0 ST Array	10848031	-	-
Affymetrix Rat Gene 1.0 ST Array	10848033	-	-
Affymetrix Rat Gene 1.0 ST Array	10848037	-	-
Affymetrix Rat Gene 1.0 ST Array	10848032	-	-
Affymetrix Rat Gene 1.0 ST Array	10848035	-	-
Affymetrix Rat Gene 1.1 ST Array	10848030	-	-
Rat Genome 230 2.0 Array	1391293_PM_at	-	-
Rat Genome 230 2.0 Array	1369546_PM_at	-	-
Rat Genome 230 2.0 Array	1391293_at	-	-
Rat Genome 230 2.0 Array	1369546_at	-	-
Affymetrix HT Rat Focus Array	1369546_at	-	-
Affymetrix HT Rat Focus Array	1369546_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300029214.rn.1	TC0300003844.rn.1	RTA TC
Rat Expression Set 230	1369546_at	-	-
Rat Expression Set 230	1369546_PM_at	-	-
Rat Expression Set 230	1391293_PM_at	-	-
Rat Expression Set 230	1391293_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10848030	-	-
Rat Genome U34 Set	rc_AI170038_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21481191	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1353895	-	-
RatRef-12 Expression BeadChip	ILMN_60493	-	-