Rn00575362_m1 Best Coverage

• Gene Symbol: Onecut1
• Gene Name: one cut homeobox 1
• Gene Aliases: Hnf6
• Chromosome Location: Chr.8: 81765860 - 81799894 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Onecut1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022671.2	NP_073162.1	1 - 2	1337		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800001105.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Onecut1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

liver development
regulation of cell-matrix adhesion
epithelial cell development
glucose metabolic process
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
endoderm development
anatomical structure morphogenesis
cell differentiation
B cell differentiation
positive regulation of cell migration
negative regulation of transforming growth factor beta receptor signaling pathway
pancreas development
endocrine pancreas development
cilium assembly
cell fate commitment
positive regulation of transcription from RNA polymerase II promoter
spleen development
system development

Function(s)

transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P120342	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	955843	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	105386	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	913936	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	388393	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	463047	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	700463	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	588127	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	819372	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	197646	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	740050	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	280294	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	853849	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	284690	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	940981	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	483718	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	16957	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	919948	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	714562	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	933060	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	340616	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	943928	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	94485	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	175839	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	44225	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P120342	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P120342	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P120342	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P701060	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	86574	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	93475	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	19568	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10911572	-	-
Affymetrix Rat Gene 1.0 ST Array	10911571	-	-
Affymetrix Rat Gene 1.0 ST Array	10911574	-	-
Affymetrix Rat Gene 1.0 ST Array	10911575	-	-
Affymetrix Rat Gene 1.0 ST Array	10911573	-	-
Affymetrix Rat Gene 1.1 ST Array	10911570	-	-
Rat Genome 230 2.0 Array	1371034_PM_at	-	-
Rat Genome 230 2.0 Array	1387760_PM_a_at	-	-
Rat Genome 230 2.0 Array	1371034_at	-	-
Rat Genome 230 2.0 Array	1387760_a_at	-	-
Affymetrix HT Rat Focus Array	1387760_a_at	-	-
Affymetrix HT Rat Focus Array	1387760_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1371034_at	-	-
Affymetrix HT Rat Focus Array	1371034_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800008032.rn.1	TC0800001105.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800008034.rn.1	TC0800001105.rn.1	RTA TC
Rat Expression Set 230	1371034_PM_at	-	-
Rat Expression Set 230	1387760_PM_a_at	-	-
Rat Expression Set 230	1371034_at	-	-
Rat Expression Set 230	1387760_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10911570	-	-
Rat Genome U34 Set	Y14933mRNA_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20711618	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363497	-	-
RatRef-12 Expression BeadChip	ILMN_54767	-	-