Rn00575768_m1 Best Coverage

• Gene Symbol: B4galnt1
• Gene Name: beta-1,4-N-acetyl-galactosaminyl transferase 1
• Gene Aliases: GalNAc-T, Galgt1
• Chromosome Location: Chr.7: 70449728 - 70459559 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: B4galnt1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022860.2	NP_074051.1	6 - 7	857		67
	XM_006241497.2	XP_006241559.1	6 - 7	1384		67
	XM_008765419.1	XP_008763641.1	6 - 7	3213		67
	XM_008765420.1	XP_008763642.1	5 - 6	1534		67
GenBank mRNA	BC081799.1	-	6 - 7	857	7133837	67
	D17809.1	-	6 - 7	746		67

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700000888.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene B4galnt1

Gene Ontology Categories:

Process(es)

ganglioside biosynthetic process
protein glycosylation
glycosphingolipid metabolic process
spermatogenesis
lipid storage
lipid glycosylation

Function(s)

(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity
acetylgalactosaminyltransferase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P12325	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	532221	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	542919	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	809401	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	252061	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	382108	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	46342	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12325	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12325	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P12325	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12325	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	53042	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10895836	-	-
Affymetrix Rat Gene 1.0 ST Array	10895840	-	-
Affymetrix Rat Gene 1.0 ST Array	10895842	-	-
Affymetrix Rat Gene 1.0 ST Array	10895839	-	-
Affymetrix Rat Gene 1.0 ST Array	10895835	-	-
Affymetrix Rat Gene 1.0 ST Array	10895841	-	-
Affymetrix Rat Gene 1.0 ST Array	10895843	-	-
Affymetrix Rat Gene 1.0 ST Array	10895832	-	-
Affymetrix Rat Gene 1.0 ST Array	10895837	-	-
Affymetrix Rat Gene 1.0 ST Array	10895833	-	-
Affymetrix Rat Gene 1.0 ST Array	10895834	-	-
Affymetrix Rat Gene 1.1 ST Array	10895830	-	-
Rat Genome 230 2.0 Array	1398272_PM_at	-	-
Rat Genome 230 2.0 Array	1398272_at	-	-
Affymetrix HT Rat Focus Array	1398272_at	-	-
Affymetrix HT Rat Focus Array	1398272_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700006657.rn.1	TC0700000888.rn.1	RTA TC
Rat Expression Set 230	1398272_PM_at	-	-
Rat Expression Set 230	1398272_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10895830	-	-
Rat Genome U34 Set	D17809_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21679082	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1373152	-	-
RatRef-12 Expression BeadChip	ILMN_52837	-	-