Rn00576694_m1 Best Coverage

• Gene Symbol: Cdx2
• Gene Name: caudal type homeo box 2
• Gene Aliases: -
• Chromosome Location: Chr.12: 9464026 - 9470565 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdx2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_023963.1	NP_076453.1	1 - 2	651		89
	XM_008768999.1	XP_008767221.1	1 - 2	542		89
GenBank mRNA	AJ278466.1	-	1 - 2	651		89

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1200000159.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdx2

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
blood vessel development
blastocyst development
trophectodermal cell differentiation
placenta development
regulation of transcription from RNA polymerase II promoter
pattern specification process
positive regulation of cell proliferation
endosome to lysosome transport
anterior/posterior pattern specification
cell differentiation
somatic stem cell population maintenance
establishment or maintenance of epithelial cell apical/basal polarity
positive regulation of cell differentiation
positive regulation of transcription, DNA-templated
labyrinthine layer development

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P157804	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	789846	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	166158	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	564945	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	128174	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157803	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157803	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P157803	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P655689	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	22027	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10756491	-	-
Affymetrix Rat Gene 1.0 ST Array	10756488	-	-
Affymetrix Rat Gene 1.0 ST Array	10756490	-	-
Affymetrix Rat Gene 1.0 ST Array	10756489	-	-
Affymetrix Rat Gene 1.1 ST Array	10756487	-	-
Rat Genome 230 2.0 Array	1387726_PM_at	-	-
Rat Genome 230 2.0 Array	1387726_at	-	-
Affymetrix HT Rat Focus Array	1387726_at	-	-
Affymetrix HT Rat Focus Array	1387726_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1200001131.rn.1	TC1200000159.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200001129.rn.1	TC1200000159.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200001130.rn.1	TC1200000159.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200001136.rn.1	TC1200000159.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200001135.rn.1	TC1200000159.rn.1	RTA TC
Rat Expression Set 230	1387726_at	-	-
Rat Expression Set 230	1387726_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10756487	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20863565	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1368698	-	-
RatRef-12 Expression BeadChip	ILMN_66195	-	-