Rn00577100_m1 Best Coverage

• Gene Symbol: Hap1
• Gene Name: huntingtin-associated protein 1
• Gene Aliases: HAP1-A, HAP1-B
• Chromosome Location: Chr.10: 88257975 - 88266210 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hap1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_024133.2	NP_077047.1	6 - 7	958		65
	NM_177982.1	NP_817091.1	6 - 7	958		65
GenBank mRNA	U38370.1	-	6 - 7	973		65
	U38373.1	-	6 - 7	973		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000003791.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hap1

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

exocytosis
autophagy
anterograde axonal transport
retrograde axonal transport
protein localization
positive regulation of neuron projection development
protein transport
regulation of exocytosis
cerebellum development
hypothalamus cell differentiation
cell projection organization
neuron projection development
positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
positive regulation of synaptic transmission, GABAergic
positive regulation of neurotrophin production
early endosome to late endosome transport
positive regulation of epidermal growth factor receptor signaling pathway
vesicle transport along microtubule
neurotrophin TRK receptor signaling pathway
positive regulation of neurogenesis
cellular response to growth factor stimulus
positive regulation of inclusion body assembly
negative regulation of beta-amyloid formation
regulation of organelle transport along microtubule
positive regulation of nonmotile primary cilium assembly

Function(s)

receptor binding
protein binding
protein domain specific binding
identical protein binding
ion channel binding
brain-derived neurotrophic factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P111723	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	316873	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	200917	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	460328	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	191108	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	810509	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	241811	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	25703	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P111723	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P111723	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P111723	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P111723	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700511495	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	104531	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	12592	-	-
Agilent Rat cDNA Microarray (G4105A)	700511495	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10747328	-	-
Affymetrix Rat Gene 1.0 ST Array	10747326	-	-
Affymetrix Rat Gene 1.0 ST Array	10747318	-	-
Affymetrix Rat Gene 1.0 ST Array	10747327	-	-
Affymetrix Rat Gene 1.0 ST Array	10747321	-	-
Affymetrix Rat Gene 1.0 ST Array	10747329	-	-
Affymetrix Rat Gene 1.0 ST Array	10747315	-	-
Affymetrix Rat Gene 1.0 ST Array	10747317	-	-
Affymetrix Rat Gene 1.0 ST Array	10747322	-	-
Affymetrix Rat Gene 1.0 ST Array	10747320	-	-
Affymetrix Rat Gene 1.0 ST Array	10747316	-	-
Affymetrix Rat Gene 1.0 ST Array	10747324	-	-
Affymetrix Rat Gene 1.0 ST Array	10747325	-	-
Affymetrix Rat Gene 1.0 ST Array	10747314	-	-
Affymetrix Rat Gene 1.0 ST Array	10747323	-	-
Affymetrix Rat Gene 1.1 ST Array	10747313	-	-
Rat Genome 230 2.0 Array	1369358_PM_a_at	-	-
Rat Genome 230 2.0 Array	1369358_a_at	-	-
Affymetrix HT Rat Focus Array	1369358_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1369358_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000033908.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033914.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033900.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033897.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033899.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033912.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033901.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033905.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033907.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033902.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033903.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033904.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033910.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033913.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033896.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033911.rn.1	TC1000003791.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033915.rn.1	TC1000003791.rn.1	RTA TC
Rat Expression Set 230	1369358_PM_a_at	-	-
Rat Expression Set 230	1369358_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10747313	-	-
Rat Genome U34 Set	U38373_s_at	-	-
Rat Genome U34 Set	U38373_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20760796	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1375614	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376870	-	-
RatRef-12 Expression BeadChip	ILMN_66361	-	-
RatRef-12 Expression BeadChip	ILMN_70064	-	-